Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26320 | Canola | cytosol | 83.12 | 84.55 |
| CDX99847 | Canola | cytosol | 84.39 | 84.39 |
| Bra032330.1-P | Field mustard | cytosol | 83.97 | 83.97 |
| Solyc02g071760.2.1 | Tomato | extracellular | 62.03 | 61.25 |
| PGSC0003DMT400073143 | Potato | cytosol | 61.18 | 60.42 |
| Solyc03g005940.2.1 | Tomato | cytosol | 59.49 | 59.24 |
| VIT_10s0003g02040.t01 | Wine grape | cytosol | 60.34 | 58.37 |
| KRH11089 | Soybean | plasma membrane | 45.15 | 56.61 |
| KRH21156 | Soybean | nucleus | 56.54 | 54.69 |
| AT5G45690.1 | Thale cress | nucleus | 55.27 | 53.04 |
| AT4G18920.1 | Thale cress | cytosol | 52.74 | 50.61 |
| TraesCS3B01G316800.1 | Wheat | plastid | 53.16 | 50.4 |
| Os01t0728700-01 | Rice | plastid | 53.16 | 50.4 |
| TraesCS3D01G283100.1 | Wheat | plastid | 52.74 | 50.0 |
| Zm00001d011755_P001 | Maize | plastid | 52.74 | 50.0 |
| EES03555 | Sorghum | plastid | 52.32 | 49.6 |
| TraesCS3A01G272700.1 | Wheat | cytosol | 51.9 | 49.6 |
| TraesCS3A01G283100.1 | Wheat | plastid | 51.9 | 49.2 |
| TraesCS3D01G272000.1 | Wheat | cytosol | 51.48 | 49.19 |
| HORVU3Hr1G069140.1 | Barley | cytosol | 52.74 | 48.45 |
| TraesCS3B01G306300.1 | Wheat | cytosol | 50.63 | 48.39 |
| HORVU3Hr1G071490.2 | Barley | cytosol | 49.79 | 47.58 |
| EES03609 | Sorghum | cytosol | 49.79 | 47.58 |
| Zm00001d043464_P001 | Maize | plastid | 48.52 | 45.63 |
| AT2G31985.1 | Thale cress | cytosol | 32.49 | 31.95 |
| GSMUA_Achr9P05700_001 | Banana | nucleus | 31.65 | 31.78 |
| AT1G05510.1 | Thale cress | cytosol | 32.07 | 31.54 |
Protein Annotations
| MapMan:35.1 | EntrezGene:839845 | UniProt:A0A178WMK9 | ProteinID:AAG51759.1 | ProteinID:AEE31117.1 | EMBL:AK118004 |
| ArrayExpress:AT1G29680 | EnsemblPlantsGene:AT1G29680 | RefSeq:AT1G29680 | TAIR:AT1G29680 | RefSeq:AT1G29680-TAIR-G | EnsemblPlants:AT1G29680.1 |
| TAIR:AT1G29680.1 | Unigene:At.71163 | EMBL:BT005255 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | RefSeq:NP_174261.1 | ProteinID:OAP19486.1 | InterPro:OBAP-like | PFAM:PF06884 | PO:PO:0000293 |
| PANTHER:PTHR31360 | PANTHER:PTHR31360:SF1 | UniProt:Q9C7N3 | UniParc:UPI000000C5AC | : | : |
Description
OBAP2COil body-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9C7N3]
Coordinates
chr1:-:10377790..10378961
Molecular Weight (calculated)
26877.1 Da
IEP (calculated)
6.420
GRAVY (calculated)
-0.466
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.