Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073145 | Potato | nucleus | 34.32 | 51.92 |
| VIT_10s0003g02040.t01 | Wine grape | cytosol | 45.76 | 44.08 |
| TraesCS3D01G272000.1 | Wheat | cytosol | 46.19 | 43.95 |
| TraesCS3B01G306300.1 | Wheat | cytosol | 46.19 | 43.95 |
| TraesCS3A01G272700.1 | Wheat | cytosol | 45.76 | 43.55 |
| EES03609 | Sorghum | cytosol | 45.34 | 43.15 |
| HORVU3Hr1G071490.2 | Barley | cytosol | 44.92 | 42.74 |
| Zm00001d043464_P001 | Maize | plastid | 44.92 | 42.06 |
| EES03555 | Sorghum | plastid | 44.49 | 42.0 |
| Solyc02g071770.2.1 | Tomato | cytosol | 43.64 | 41.87 |
| TraesCS3B01G316800.1 | Wheat | plastid | 44.07 | 41.6 |
| Os01t0728700-01 | Rice | plastid | 43.64 | 41.2 |
| TraesCS3D01G283100.1 | Wheat | plastid | 43.22 | 40.8 |
| Solyc03g005940.2.1 | Tomato | cytosol | 41.1 | 40.76 |
| HORVU3Hr1G069140.1 | Barley | cytosol | 44.49 | 40.7 |
| TraesCS3A01G283100.1 | Wheat | plastid | 42.8 | 40.4 |
| KRH21156 | Soybean | nucleus | 41.53 | 40.0 |
| PGSC0003DMT400073143 | Potato | cytosol | 40.68 | 40.0 |
| Zm00001d011755_P001 | Maize | plastid | 42.37 | 40.0 |
| Solyc02g071760.2.1 | Tomato | extracellular | 40.25 | 39.58 |
| Bra025063.1-P | Field mustard | cytosol | 40.25 | 38.62 |
| CDY39441 | Canola | cytosol | 40.25 | 38.62 |
| AT5G45690.1 | Thale cress | nucleus | 40.25 | 38.46 |
| CDY59324 | Canola | cytosol | 39.83 | 38.21 |
| CDX99410 | Canola | cytosol | 38.56 | 36.84 |
| AT4G18920.1 | Thale cress | cytosol | 37.29 | 35.63 |
| KRH11089 | Soybean | plasma membrane | 27.97 | 34.92 |
| Bra012566.1-P | Field mustard | cytosol | 32.2 | 33.93 |
| CDY01566 | Canola | cytosol | 12.29 | 32.95 |
| Bra032330.1-P | Field mustard | cytosol | 33.05 | 32.91 |
| CDY26320 | Canola | cytosol | 32.2 | 32.62 |
| CDX99847 | Canola | cytosol | 32.2 | 32.07 |
| AT1G29680.1 | Thale cress | cytosol | 31.78 | 31.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.54 | 27.78 |
| CDX78906 | Canola | cytosol | 40.25 | 19.59 |
| Bra013362.1-P | Field mustard | cytosol | 39.83 | 19.46 |
| PGSC0003DMT400073144 | Potato | cytosol | 7.2 | 16.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P05700_001 | EnsemblPlants:GSMUA_Achr9T05700_001 | EnsemblPlantsGene:GSMUA_Achr9G05700_001 | InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF1 |
| PFAM:PF06884 | SEG:seg | UniParc:UPI000294BD32 | UniProt:M0TXS9 | MapMan:35.1 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G05700_001]
Coordinates
chr9:+:3640735..3641670
Molecular Weight (calculated)
25552.2 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.550
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDESPKP AAVAGGEGPT PPGKPMTLGQ KVIDKGAEML QSLKPVKQFK QHICSFALYG HDLTRQIETH HYCGRLNQDF LQCAVYDTDD SSAHLIGVEY
101: IVSDSIFNKL PPEEQKLWHS HAHEIKRPPP AGRPGAHDVA PGGEPGHGPP GLGEETGRQV QDLERGAQGV EAGRRGARID QSERGLLVEA PHGLRHRRGG
201: DGDEAPGAIS MTEFPWFRLA TFDGQAKVVI YVFACI
101: IVSDSIFNKL PPEEQKLWHS HAHEIKRPPP AGRPGAHDVA PGGEPGHGPP GLGEETGRQV QDLERGAQGV EAGRRGARID QSERGLLVEA PHGLRHRRGG
201: DGDEAPGAIS MTEFPWFRLA TFDGQAKVVI YVFACI
001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP
Arabidopsis Description
OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.