Factsheet for Bra032330.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P
Bra021765.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	Bra021765.1-P	AT2G31985.1	21798944
AT1G29680.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26320	Canola	cytosol	97.47	99.14
CDX99847	Canola	cytosol	97.47	97.47
AT1G29680.1	Thale cress	cytosol	83.97	83.97
Solyc02g071760.2.1	Tomato	extracellular	62.03	61.25
PGSC0003DMT400073143	Potato	cytosol	61.18	60.42
Solyc03g005940.2.1	Tomato	cytosol	59.92	59.66
VIT_10s0003g02040.t01	Wine grape	cytosol	61.18	59.18
KRH11089	Soybean	plasma membrane	45.99	57.67
KRH21156	Soybean	nucleus	57.38	55.51
Bra025063.1-P	Field mustard	cytosol	56.96	54.88
TraesCS3B01G316800.1	Wheat	plastid	55.7	52.8
TraesCS3D01G283100.1	Wheat	plastid	55.27	52.4
Os01t0728700-01	Rice	plastid	54.85	52.0
TraesCS3A01G283100.1	Wheat	plastid	54.43	51.6
HORVU3Hr1G069140.1	Barley	cytosol	56.12	51.55
EES03555	Sorghum	plastid	53.16	50.4
Zm00001d011755_P001	Maize	plastid	52.74	50.0
TraesCS3D01G272000.1	Wheat	cytosol	51.48	49.19
TraesCS3A01G272700.1	Wheat	cytosol	51.05	48.79
TraesCS3B01G306300.1	Wheat	cytosol	51.05	48.79
EES03609	Sorghum	cytosol	50.63	48.39
Bra012566.1-P	Field mustard	cytosol	45.57	48.21
HORVU3Hr1G071490.2	Barley	cytosol	49.79	47.58
Zm00001d043464_P001	Maize	plastid	49.37	46.43
Bra015432.1-P	Field mustard	cytosol	36.29	35.68
GSMUA_Achr9P05700_001	Banana	nucleus	32.91	33.05
Bra021765.1-P	Field mustard	cytosol	32.91	32.37
Bra013362.1-P	Field mustard	cytosol	54.01	26.5

Protein Annotations

EnsemblPlants:Bra032330.1	EnsemblPlants:Bra032330.1-P	EnsemblPlantsGene:Bra032330	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1
PFAM:PF06884	UniParc:UPI000254263F	UniProt:M4EU48	MapMan:35.1	:	:

Description

AT1G29680 (E=4e-122) | unknown protein

Coordinates

chrA09:+:22496567..22497575

Molecular Weight (calculated)

27144.2 Da

IEP (calculated)

5.851

GRAVY (calculated)

-0.561

Length

237 amino acids

Sequence
(BLAST)

001: MASSGDENQV APGDPVTVST RMIDAGTTIM QRRLPVKQMN CHVSTFAIYS GDMSRQIETH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYENL
101: PQDEQKLWHS HAYEVKSGSW AYPRLPEILA TPELKNIAKT YGKFWCTWQT DRGDKLPVGA PELMMSPQGV EQGVLRPELV KIRDEKYNIS TDQLKHQRAE
201: IAEPEWINPM ADYWKQHGKC FVIDIATVDM KSNEKFP

Best Arabidopsis Sequence Match ( AT1G29680.1 )
(BLAST)

001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP

Arabidopsis Description

OBAP2COil body-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9C7N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.