Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g116320.2.1 | |
| Solyc09g098120.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29680.1 | Solyc09g098120.2.1 | AT2G31985.1 | 21798944 |
| AT1G29680.1 | Solyc03g116320.2.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073143 | Potato | cytosol | 97.92 | 97.92 |
| Solyc03g005940.2.1 | Tomato | cytosol | 75.42 | 76.05 |
| VIT_10s0003g02040.t01 | Wine grape | cytosol | 71.25 | 69.8 |
| Solyc02g071770.2.1 | Tomato | cytosol | 67.92 | 66.26 |
| KRH11089 | Soybean | plasma membrane | 51.67 | 65.61 |
| KRH21156 | Soybean | nucleus | 64.17 | 62.86 |
| AT1G29680.1 | Thale cress | cytosol | 61.25 | 62.03 |
| Bra032330.1-P | Field mustard | cytosol | 61.25 | 62.03 |
| CDY26320 | Canola | cytosol | 60.0 | 61.8 |
| CDX99847 | Canola | cytosol | 60.42 | 61.18 |
| AT5G45690.1 | Thale cress | nucleus | 60.83 | 59.11 |
| TraesCS3D01G283100.1 | Wheat | plastid | 61.25 | 58.8 |
| Os01t0728700-01 | Rice | plastid | 61.25 | 58.8 |
| CDY39441 | Canola | cytosol | 60.0 | 58.54 |
| Bra025063.1-P | Field mustard | cytosol | 60.0 | 58.54 |
| TraesCS3B01G316800.1 | Wheat | plastid | 60.83 | 58.4 |
| TraesCS3A01G283100.1 | Wheat | plastid | 60.83 | 58.4 |
| CDY59324 | Canola | cytosol | 59.58 | 58.13 |
| TraesCS3D01G272000.1 | Wheat | cytosol | 59.17 | 57.26 |
| TraesCS3B01G306300.1 | Wheat | cytosol | 59.17 | 57.26 |
| HORVU3Hr1G069140.1 | Barley | cytosol | 60.83 | 56.59 |
| HORVU3Hr1G071490.2 | Barley | cytosol | 58.33 | 56.45 |
| Zm00001d011755_P001 | Maize | plastid | 58.75 | 56.4 |
| AT4G18920.1 | Thale cress | cytosol | 57.92 | 56.28 |
| TraesCS3A01G272700.1 | Wheat | cytosol | 57.92 | 56.05 |
| CDX99410 | Canola | cytosol | 57.5 | 55.87 |
| EES03555 | Sorghum | plastid | 57.92 | 55.6 |
| EES03609 | Sorghum | cytosol | 55.42 | 53.63 |
| Zm00001d043464_P001 | Maize | plastid | 56.25 | 53.57 |
| Bra012566.1-P | Field mustard | cytosol | 49.17 | 52.68 |
| GSMUA_Achr9P05700_001 | Banana | nucleus | 39.58 | 40.25 |
| Solyc09g098120.2.1 | Tomato | cytosol | 37.5 | 37.82 |
| CDY01566 | Canola | cytosol | 13.33 | 36.36 |
| Bra013362.1-P | Field mustard | cytosol | 57.5 | 28.57 |
| CDX78906 | Canola | cytosol | 57.5 | 28.45 |
Protein Annotations
| EnsemblPlants:Solyc02g071760.2.1 | EnsemblPlantsGene:Solyc02g071760.2 | InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF1 | PFAM:PF06884 |
| UniParc:UPI0002769012 | UniProt:K4B8F1 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2:-:41124571..41125820
Molecular Weight (calculated)
27776.2 Da
IEP (calculated)
6.909
GRAVY (calculated)
-0.620
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATTAGSHG EQIPPGKAMT TEQHILDKGA QMLQSLKPIK QMNQHVCTFA LYNHDMNRQI ETHHYVTRVN QDFLQCAVYD SDHSNARLIG VEYIVSDRIF
101: ETLPKEEQKL WHSHAYEVKS GLWVNPRVPE MVVKKDLENF AKTYGKFWCT WQTDRGDKLP VGPPSLMMSP QAVNLGMVKP ELIQKRDDRY NISTDAIKRT
201: RLEIAEPEWI NPEADYWKQH GKCFEIHVED VEMKKIAPFP
101: ETLPKEEQKL WHSHAYEVKS GLWVNPRVPE MVVKKDLENF AKTYGKFWCT WQTDRGDKLP VGPPSLMMSP QAVNLGMVKP ELIQKRDDRY NISTDAIKRT
201: RLEIAEPEWI NPEADYWKQH GKCFEIHVED VEMKKIAPFP
001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP
Arabidopsis Description
OBAP2COil body-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9C7N3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.