CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES05730
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	EES05730	AT2G31985.1	21798944
AT1G29680.1	EER88112	AT3G47620.1	21798944
AT1G29680.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011755_P001	Maize	plastid	92.4	92.4
Os01t0728700-01	Rice	plastid	85.6	85.6
TraesCS3D01G283100.1	Wheat	plastid	84.4	84.4
TraesCS3B01G316800.1	Wheat	plastid	83.6	83.6
TraesCS3A01G283100.1	Wheat	plastid	83.2	83.2
HORVU3Hr1G069140.1	Barley	cytosol	84.0	81.4
EES03609	Sorghum	cytosol	62.4	62.9
VIT_10s0003g02040.t01	Wine grape	cytosol	60.8	62.04
PGSC0003DMT400073145	Potato	nucleus	36.4	58.33
PGSC0003DMT400073143	Potato	cytosol	56.0	58.33
Solyc02g071760.2.1	Tomato	extracellular	55.6	57.92
KRH21156	Soybean	nucleus	56.4	57.55
Solyc02g071770.2.1	Tomato	cytosol	55.6	56.5
Solyc03g005940.2.1	Tomato	cytosol	53.2	55.88
KRH11089	Soybean	plasma membrane	41.6	55.03
AT4G18920.1	Thale cress	cytosol	54.0	54.66
CDX99410	Canola	cytosol	54.0	54.66
AT5G45690.1	Thale cress	nucleus	53.2	53.85
CDY39441	Canola	cytosol	52.4	53.25
Bra025063.1-P	Field mustard	cytosol	52.4	53.25
CDX99847	Canola	cytosol	50.4	53.16
Bra032330.1-P	Field mustard	cytosol	50.4	53.16
CDY59324	Canola	cytosol	52.0	52.85
CDY26320	Canola	cytosol	49.2	52.79
AT1G29680.1	Thale cress	cytosol	49.6	52.32
Bra012566.1-P	Field mustard	cytosol	43.2	48.21
GSMUA_Achr9P05700_001	Banana	nucleus	42.0	44.49
PGSC0003DMT400073144	Potato	cytosol	18.4	43.81
EES05730	Sorghum	cytosol	34.0	35.71
CDY01566	Canola	cytosol	12.4	35.23
Bra013362.1-P	Field mustard	cytosol	54.0	27.95
CDX78906	Canola	cytosol	54.0	27.84

Protein Annotations

EnsemblPlants:EES03555	EnsemblPlantsGene:SORBI_3003G283700	EntrezGene:8069824	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1
PFAM:PF06884	ProteinID:EES03555	ProteinID:EES03555.1	ProteinID:OQU87458.1	RefSeq:XP_002458435.1	SEG:seg
unigene:Sbi.2788	UniParc:UPI0001A84E54	UniProt:C5XJ01	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:61781485..61782900

Molecular Weight (calculated)

27531.5 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.455

Length

250 amino acids

Sequence
(BLAST)

001: MSSSDQNPAA TPASGGPAEP SPPGRPTAVS SQVLDAGARL VQSLKPVRQM KQHACSFALY AHDLHRQMEV HHFVSRLNQD VLQCAVYDSD KPSARLIGVE
101: YIVSDSIFEG LPPDEQRLWH SHAYEVKAGL WTDVGVPESL QSSEMASLAK TYGKLWCTWQ VDRGDALPLG APALMVSPQA VEPGRARGEL VRGRDERYRV
201: DSSAGGLKAA RVEMDEPEWI NPNADYWRLH RKGFAVDVVP AEMKRHAPFP

Best Arabidopsis Sequence Match ( AT5G45690.1 )
(BLAST)

001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP

Arabidopsis Description

OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.