Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073143 | Potato | cytosol | 67.31 | 43.75 |
| TraesCS3D01G272000.1 | Wheat | cytosol | 63.46 | 39.92 |
| TraesCS3B01G306300.1 | Wheat | cytosol | 62.82 | 39.52 |
| HORVU3Hr1G071490.2 | Barley | cytosol | 61.54 | 38.71 |
| TraesCS3A01G272700.1 | Wheat | cytosol | 61.54 | 38.71 |
| EES03609 | Sorghum | cytosol | 60.9 | 38.31 |
| TraesCS3B01G316800.1 | Wheat | plastid | 60.26 | 37.6 |
| Zm00001d043464_P001 | Maize | plastid | 58.97 | 36.51 |
| TraesCS3D01G283100.1 | Wheat | plastid | 58.33 | 36.4 |
| EES03555 | Sorghum | plastid | 58.33 | 36.4 |
| TraesCS3A01G283100.1 | Wheat | plastid | 57.69 | 36.0 |
| HORVU3Hr1G069140.1 | Barley | cytosol | 58.97 | 35.66 |
| Os01t0728700-01 | Rice | plastid | 57.05 | 35.6 |
| Zm00001d011755_P001 | Maize | plastid | 57.05 | 35.6 |
| GSMUA_Achr9P05700_001 | Banana | nucleus | 51.92 | 34.32 |
| PGSC0003DMT400016814 | Potato | cytosol | 35.9 | 23.53 |
| PGSC0003DMT400073144 | Potato | cytosol | 3.85 | 5.71 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073145 | EnsemblPlantsGene:PGSC0003DMG400028447 | InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF1 | PFAM:PF06884 |
| PGSC:PGSC0003DMG400028447 | UniParc:UPI0002960A78 | UniProt:M1CRL7 | MapMan:35.1 | : | : |
Description
Lipoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400028447]
Coordinates
chr2:-:31067750..31068610
Molecular Weight (calculated)
17702.1 Da
IEP (calculated)
6.624
GRAVY (calculated)
-0.555
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDEAPGA MPPGDGSVPP GKSMSIGQHV IDKGAQLMQS LKPIKQMSQH VCTFAMYSHD ITRQIETHHY VSRVNQDFLQ CAVYESDDSK GRLIDRIFET
101: LPAEEQKLWH SHEYEIIAGL WVNPKVPEMV QKQELKNLAP TYGKFWCTWQ VDRGKS
101: LPAEEQKLWH SHEYEIIAGL WVNPKVPEMV QKQELKNLAP TYGKFWCTWQ VDRGKS
001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP
Arabidopsis Description
OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.