Factsheet for TraesCS3A01G283100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G239600.1
TraesCS5A01G243900.1
TraesCS5B01G241900.1
TraesCS5D01G250600.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	TraesCS5A01G239600.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5A01G243900.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5B01G241900.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5D01G250600.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G283100.1	Wheat	plastid	96.4	96.4
TraesCS3B01G316800.1	Wheat	plastid	95.2	95.2
HORVU3Hr1G069140.1	Barley	cytosol	94.8	91.86
Os01t0728700-01	Rice	plastid	86.0	86.0
EES03555	Sorghum	plastid	83.2	83.2
Zm00001d011755_P001	Maize	plastid	82.0	82.0
VIT_10s0003g02040.t01	Wine grape	cytosol	64.0	65.31
TraesCS3A01G272700.1	Wheat	cytosol	63.6	64.11
PGSC0003DMT400073143	Potato	cytosol	58.8	61.25
Solyc02g071760.2.1	Tomato	extracellular	58.4	60.83
KRH21156	Soybean	nucleus	58.8	60.0
KRH11089	Soybean	plasma membrane	44.4	58.73
Solyc02g071770.2.1	Tomato	cytosol	57.2	58.13
PGSC0003DMT400073145	Potato	nucleus	36.0	57.69
Solyc03g005940.2.1	Tomato	cytosol	54.8	57.56
CDY39441	Canola	cytosol	54.8	55.69
Bra025063.1-P	Field mustard	cytosol	54.8	55.69
CDY59324	Canola	cytosol	54.4	55.28
Bra032330.1-P	Field mustard	cytosol	51.6	54.43
CDY26320	Canola	cytosol	50.4	54.08
CDX99847	Canola	cytosol	51.2	54.01
AT5G45690.1	Thale cress	nucleus	53.2	53.85
AT4G18920.1	Thale cress	cytosol	51.6	52.23
AT1G29680.1	Thale cress	cytosol	49.2	51.9
CDX99410	Canola	cytosol	51.2	51.82
Bra012566.1-P	Field mustard	cytosol	42.4	47.32
PGSC0003DMT400073144	Potato	cytosol	19.2	45.71
GSMUA_Achr9P05700_001	Banana	nucleus	40.4	42.8
TraesCS5A01G243900.1	Wheat	cytosol	34.4	36.44
TraesCS5A01G239600.1	Wheat	cytosol	29.6	33.18
CDY01566	Canola	cytosol	11.2	31.82
Bra013362.1-P	Field mustard	cytosol	51.6	26.71
CDX78906	Canola	cytosol	51.6	26.6

Protein Annotations

EnsemblPlants:TraesCS3A01G283100.1	EnsemblPlantsGene:TraesCS3A01G283100	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1	PFAM:PF06884
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:511680757..511681589

Molecular Weight (calculated)

27972.2 Da

IEP (calculated)

6.308

GRAVY (calculated)

-0.528

Length

250 amino acids

Sequence
(BLAST)

001: MSSSDQNPAP TPTSGAGGTA PPPGRPTTVS SQAIDMGAQV LQTLKPVRQM KQHACSFALY AHDMHRQLEV HHFVSRLNQD VLQCAVYDSD KPSARLIGVE
101: YIVSDNIFEA LPPEEQRLWH SHAYEVKAGL WTDVGVPEML QTSEMARMAK TYGKFWCTWQ VDRSDRLPLG APALMMSPQA VEPGRVRAEL VRARDERCKV
201: DSSARGLKAE RVEMDEPEWI NPNADYWRLH GKGFAVDVTD TEMKQQAPFP

Best Arabidopsis Sequence Match ( AT1G29680.1 )
(BLAST)

001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP

Arabidopsis Description

OBAP2COil body-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9C7N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.