CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH31541
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	KRH31541	AT2G31985.1	21798944
AT1G29680.1	KRH03466	AT3G47620.1	21798944
AT1G29680.1	KRH54542	AT3G47620.1	21798944
AT1G29680.1	KRH56919	AT3G47620.1	21798944
AT1G29680.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21156	Soybean	nucleus	86.77	66.94
VIT_10s0003g02040.t01	Wine grape	cytosol	68.25	52.65
Solyc02g071760.2.1	Tomato	extracellular	65.61	51.67
PGSC0003DMT400073143	Potato	cytosol	64.55	50.83
Solyc03g005940.2.1	Tomato	cytosol	60.85	48.32
Bra032330.1-P	Field mustard	cytosol	57.67	45.99
CDX99847	Canola	cytosol	57.67	45.99
CDY26320	Canola	cytosol	56.61	45.92
Os01t0728700-01	Rice	plastid	59.79	45.2
AT1G29680.1	Thale cress	cytosol	56.61	45.15
TraesCS3B01G316800.1	Wheat	plastid	58.73	44.4
TraesCS3D01G283100.1	Wheat	plastid	58.73	44.4
TraesCS3A01G283100.1	Wheat	plastid	58.73	44.4
HORVU3Hr1G069140.1	Barley	cytosol	59.26	43.41
AT5G45690.1	Thale cress	nucleus	55.56	42.51
CDY39441	Canola	cytosol	55.03	42.28
CDY59324	Canola	cytosol	55.03	42.28
Bra025063.1-P	Field mustard	cytosol	55.03	42.28
EES03555	Sorghum	plastid	55.03	41.6
Zm00001d011755_P001	Maize	plastid	55.03	41.6
CDX99410	Canola	cytosol	53.44	40.89
TraesCS3D01G272000.1	Wheat	cytosol	53.44	40.73
TraesCS3B01G306300.1	Wheat	cytosol	53.44	40.73
HORVU3Hr1G071490.2	Barley	cytosol	53.44	40.73
AT4G18920.1	Thale cress	cytosol	52.91	40.49
TraesCS3A01G272700.1	Wheat	cytosol	52.38	39.92
EES03609	Sorghum	cytosol	51.32	39.11
Zm00001d043464_P001	Maize	plastid	51.32	38.49
Bra012566.1-P	Field mustard	cytosol	44.97	37.95
KRH31541	Soybean	nucleus	37.57	30.34
GSMUA_Achr9P05700_001	Banana	nucleus	34.92	27.97
Bra013362.1-P	Field mustard	cytosol	52.38	20.5
CDX78906	Canola	cytosol	52.38	20.41
CDY01566	Canola	cytosol	5.82	12.5

Protein Annotations

EMBL:ACUP02009178	EnsemblPlants:KRH11089	EnsemblPlantsGene:GLYMA_15G088300	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1
PFAM:PF06884	ProteinID:KRH11089	ProteinID:KRH11089.1	UniParc:UPI000294BB69	UniProt:K7MAE5	MapMan:35.1

Description

hypothetical protein

Coordinates

chr15:+:6783646..6785019

Molecular Weight (calculated)

21781.0 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.160

Length

189 amino acids

Sequence
(BLAST)

001: QHVCSFAIYS HDMSRQIETH HYCSRLSQNF IQCAVYDTDE INARLLVVLW VCVISVEYIV PADVFETFPP EEQKLWHSHA YEIKSGLLVN LRVPEVIAMP
101: DLENFAQTYG KFWCTWQVDR ALMMSPQAVS PGLVRADLVL ERDAKYNISS DGLKSSRLEI PEPEMINPLA DYWKQHGKGF GINIEETEM

Best Arabidopsis Sequence Match ( AT1G29680.1 )
(BLAST)

001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP

Arabidopsis Description

OBAP2COil body-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9C7N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.