Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
nucleus: 27291164 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05510.1 | KRH11089 | AT1G29680.1 | 21798944 |
| AT1G05510.1 | KRH21156 | AT1G29680.1 | 21798944 |
| AT2G31985.1 | KRH11089 | AT1G29680.1 | 21798944 |
| AT2G31985.1 | KRH21156 | AT1G29680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0062g00810.t01 | Wine grape | cytosol | 64.1 | 64.38 |
| Solyc09g098120.2.1 | Tomato | cytosol | 63.68 | 62.6 |
| PGSC0003DMT400016814 | Potato | cytosol | 63.68 | 62.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.97 | 61.97 |
| AT1G05510.1 | Thale cress | cytosol | 62.39 | 60.58 |
| CDY66704 | Canola | cytosol | 61.97 | 60.17 |
| Bra021765.1-P | Field mustard | cytosol | 61.54 | 59.75 |
| CDY10117 | Canola | cytosol | 61.54 | 59.75 |
| CDY68306 | Canola | cytosol | 61.54 | 59.75 |
| AT2G31985.1 | Thale cress | cytosol | 61.11 | 59.34 |
| CDY47277 | Canola | cytosol | 61.11 | 59.34 |
| Bra015432.1-P | Field mustard | cytosol | 61.11 | 59.34 |
| TraesCS5D01G250600.1 | Wheat | cytosol | 57.69 | 57.2 |
| TraesCS5A01G239600.1 | Wheat | cytosol | 54.27 | 56.95 |
| TraesCS5B01G241900.1 | Wheat | cytosol | 57.27 | 56.78 |
| TraesCS5A01G243900.1 | Wheat | cytosol | 55.98 | 55.51 |
| EES05730 | Sorghum | cytosol | 56.41 | 55.46 |
| Zm00001d051459_P001 | Maize | cytosol | 55.98 | 55.04 |
| HORVU5Hr1G069360.3 | Barley | cytosol | 49.57 | 45.31 |
| Os05t0569500-01 | Rice | cytosol, plastid | 49.57 | 45.14 |
| HORVU7Hr1G074020.2 | Barley | cytosol | 40.17 | 40.87 |
| KRH11089 | Soybean | plasma membrane | 30.34 | 37.57 |
| KRH21156 | Soybean | nucleus | 36.75 | 35.1 |
Protein Annotations
| EMBL:ACUP02007146 | EnsemblPlants:KRH31541 | EnsemblPlantsGene:GLYMA_11G252800 | InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF0 |
| PFAM:PF06884 | ProteinID:KRH31541 | ProteinID:KRH31541.1 | SEG:seg | UniParc:UPI00023CC733 | UniProt:I1LN49 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:34378140..34379759
Molecular Weight (calculated)
27067.5 Da
IEP (calculated)
7.074
GRAVY (calculated)
-0.506
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: METHKNGEPT TGTYLRDTAT SAIQNFAPIN KIHQHLCAFH FYSYDMSRQV EAHHFCAHQN EEMRQCLIYD SPEKKARLIG LEYIISENLY LTLPDQEKRL
101: WHSHLYEVKS GLFFMPKVPA LIQRPDMETV CTTYGKVFHF WQVDKGHSLP FGIPQLMMAL TRDGQIYDHL LQSSAERMGI DYEEERKARE YMTGPVHGIH
201: PLANGGGKGL ELRLREVELK HDPSPPSVKA RILF
101: WHSHLYEVKS GLFFMPKVPA LIQRPDMETV CTTYGKVFHF WQVDKGHSLP FGIPQLMMAL TRDGQIYDHL LQSSAERMGI DYEEERKARE YMTGPVHGIH
201: PLANGGGKGL ELRLREVELK HDPSPPSVKA RILF
001: MEKAVHLSTK NGPKVPGEPT KTGTSMVDTA ASAVQSFAPI NQIHQHLCAF HFYAYDMTRQ VEAHHFCGHI NEDMRQCLIY DGPDANARLI GLEYIVTEKL
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V
Arabidopsis Description
OBAP1AOil body-associated protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVY7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.