Factsheet for PGSC0003DMT400016814

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400073143

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05510.1	PGSC0003DMT400073143	AT1G29680.1	21798944
AT2G31985.1	PGSC0003DMT400073143	AT1G29680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098120.2.1	Tomato	cytosol	97.06	97.06
VIT_05s0062g00810.t01	Wine grape	cytosol	75.63	77.25
GSMUA_AchrUn_...	Banana	cytosol	68.49	69.66
TraesCS5D01G250600.1	Wheat	cytosol	67.65	68.22
AT1G05510.1	Thale cress	cytosol	68.91	68.05
TraesCS5B01G241900.1	Wheat	cytosol	67.23	67.8
EES05730	Sorghum	cytosol	67.65	67.65
CDY10117	Canola	cytosol	68.49	67.63
TraesCS5A01G243900.1	Wheat	cytosol	66.81	67.37
TraesCS5A01G239600.1	Wheat	cytosol	63.03	67.26
CDY47277	Canola	cytosol	68.07	67.22
Bra015432.1-P	Field mustard	cytosol	68.07	67.22
Zm00001d051459_P001	Maize	cytosol	65.97	65.97
CDY66704	Canola	cytosol	65.55	64.73
CDY68306	Canola	cytosol	65.55	64.73
Bra021765.1-P	Field mustard	cytosol	65.55	64.73
AT2G31985.1	Thale cress	cytosol	65.13	64.32
KRH31541	Soybean	nucleus	62.6	63.68
HORVU5Hr1G069360.3	Barley	cytosol	58.82	54.69
Os05t0569500-01	Rice	cytosol, plastid	56.72	52.53
HORVU7Hr1G074020.2	Barley	cytosol	47.48	49.13
PGSC0003DMT400073143	Potato	cytosol	37.4	37.08
PGSC0003DMT400073145	Potato	nucleus	23.53	35.9
PGSC0003DMT400073144	Potato	cytosol	11.34	25.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400016814	EnsemblPlantsGene:PGSC0003DMG400006578	EntrezGene:102584831	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF0
PFAM:PF06884	PGSC:PGSC0003DMG400006578	RefSeq:XP_006366719.1	UniParc:UPI00029549E7	UniProt:M1A870	MapMan:35.1

Description

Lipoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400006578]

Coordinates

chr9:+:60837783..60840055

Molecular Weight (calculated)

26922.1 Da

IEP (calculated)

6.138

GRAVY (calculated)

-0.445

Length

238 amino acids

Sequence
(BLAST)

001: MEGINVSTHP DVPGEPTQTG TAILETATAT IQGFGPINKI HQHLCAFHFY GHDMTRQVEA HHFCGHQNEE FRQCLIYDRP DADGRLIGLE YIVSEELFLT
101: LPDDEKKFWH SHLYEVKSGV LFMPGVPGPI QRQDHEKTVK TYGKVIHFWQ VDRGDTLPLG IPQVMMALTR DGQLDQNLAQ DVEKRFGVSF DEEREKRAYM
201: EGPAHGIHPL ANAGGKGIRT LLREVDCKPI ESVPRVFV

Best Arabidopsis Sequence Match ( AT1G05510.1 )
(BLAST)

001: MEKAVHLSTK NGPKVPGEPT KTGTSMVDTA ASAVQSFAPI NQIHQHLCAF HFYAYDMTRQ VEAHHFCGHI NEDMRQCLIY DGPDANARLI GLEYIVTEKL
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V

Arabidopsis Description

OBAP1AOil body-associated protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.