Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G239600.1 | Wheat | cytosol | 91.53 | 96.86 |
| EES05730 | Sorghum | cytosol | 86.86 | 86.13 |
| Zm00001d051459_P001 | Maize | cytosol | 86.44 | 85.71 |
| HORVU5Hr1G069360.3 | Barley | cytosol | 75.85 | 69.92 |
| VIT_05s0062g00810.t01 | Wine grape | cytosol | 68.64 | 69.53 |
| GSMUA_AchrUn_... | Banana | cytosol | 66.53 | 67.09 |
| PGSC0003DMT400016814 | Potato | cytosol | 67.37 | 66.81 |
| Solyc09g098120.2.1 | Tomato | cytosol | 66.1 | 65.55 |
| Os05t0569500-01 | Rice | cytosol, plastid | 70.76 | 64.98 |
| CDY66704 | Canola | cytosol | 66.1 | 64.73 |
| CDY68306 | Canola | cytosol | 66.1 | 64.73 |
| Bra021765.1-P | Field mustard | cytosol | 66.1 | 64.73 |
| AT1G05510.1 | Thale cress | cytosol | 65.68 | 64.32 |
| CDY10117 | Canola | cytosol | 64.41 | 63.07 |
| CDY47277 | Canola | cytosol | 64.41 | 63.07 |
| Bra015432.1-P | Field mustard | cytosol | 64.41 | 63.07 |
| AT2G31985.1 | Thale cress | cytosol | 62.71 | 61.41 |
| KRH31541 | Soybean | nucleus | 55.51 | 55.98 |
| TraesCS3A01G272700.1 | Wheat | cytosol | 39.83 | 37.9 |
| TraesCS3A01G283100.1 | Wheat | plastid | 36.44 | 34.4 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G243900.1 | EnsemblPlantsGene:TraesCS5A01G243900 | InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF0 | PFAM:PF06884 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:458202767..458203562
Molecular Weight (calculated)
26101.2 Da
IEP (calculated)
5.708
GRAVY (calculated)
-0.245
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASCHDVDV PGKPTETGTA LLEAATGAIQ GFAPINQIHQ HLCAFHFYGD DMTRQVEAHH FCAHLNEDVR QCLVFDGPDA GARLIGVEYI VTEELFLTLP
101: DEEKPLWHTH EFEVKGGMLF MPGVPGVVER RDLEQVAKTY GKTVHFWQVD RGDALPLGLP QIMMALTREG QLRQDLADCV EKKFSVSFQK ERENRAYMSG
201: PAHGIHPLAN AAGKGLKTEI REVDLPAANT GARIFT
101: DEEKPLWHTH EFEVKGGMLF MPGVPGVVER RDLEQVAKTY GKTVHFWQVD RGDALPLGLP QIMMALTREG QLRQDLADCV EKKFSVSFQK ERENRAYMSG
201: PAHGIHPLAN AAGKGLKTEI REVDLPAANT GARIFT
001: MEKAVHLSTK NGPKVPGEPT KTGTSMVDTA ASAVQSFAPI NQIHQHLCAF HFYAYDMTRQ VEAHHFCGHI NEDMRQCLIY DGPDANARLI GLEYIVTEKL
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V
Arabidopsis Description
OBAP1AOil body-associated protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVY7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.