Factsheet for TraesCS3D01G272000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G239600.1
TraesCS5A01G243900.1
TraesCS5B01G241900.1
TraesCS5D01G250600.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	TraesCS5A01G239600.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5A01G243900.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5B01G241900.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5D01G250600.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G306300.1	Wheat	cytosol	97.98	97.98
HORVU3Hr1G071490.2	Barley	cytosol	97.18	97.18
TraesCS3A01G272700.1	Wheat	cytosol	94.76	94.76
EES03609	Sorghum	cytosol	78.23	78.23
Zm00001d043464_P001	Maize	plastid	79.44	78.17
VIT_10s0003g02040.t01	Wine grape	cytosol	63.31	64.08
TraesCS3D01G283100.1	Wheat	plastid	64.52	64.0
PGSC0003DMT400073145	Potato	nucleus	39.92	63.46
Solyc02g071770.2.1	Tomato	cytosol	61.29	61.79
Solyc03g005940.2.1	Tomato	cytosol	58.06	60.5
PGSC0003DMT400073143	Potato	cytosol	58.06	60.0
Solyc02g071760.2.1	Tomato	extracellular	57.26	59.17
CDY39441	Canola	cytosol	58.47	58.94
CDY59324	Canola	cytosol	58.47	58.94
Bra025063.1-P	Field mustard	cytosol	58.47	58.94
CDX99410	Canola	cytosol	57.66	57.89
KRH21156	Soybean	nucleus	56.85	57.55
AT5G45690.1	Thale cress	nucleus	56.85	57.09
AT4G18920.1	Thale cress	cytosol	56.45	56.68
KRH11089	Soybean	plasma membrane	40.73	53.44
Bra012566.1-P	Field mustard	cytosol	47.18	52.23
CDY26320	Canola	cytosol	48.79	51.93
CDX99847	Canola	cytosol	49.6	51.9
Bra032330.1-P	Field mustard	cytosol	49.19	51.48
AT1G29680.1	Thale cress	cytosol	49.19	51.48
PGSC0003DMT400073144	Potato	cytosol	20.16	47.62
GSMUA_Achr9P05700_001	Banana	nucleus	43.95	46.19
CDY01566	Canola	cytosol	14.11	39.77
TraesCS5D01G250600.1	Wheat	cytosol	35.48	37.29
Bra013362.1-P	Field mustard	cytosol	58.06	29.81
CDX78906	Canola	cytosol	58.06	29.69

Protein Annotations

EnsemblPlants:TraesCS3D01G272000.1	EnsemblPlantsGene:TraesCS3D01G272000	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF9	PFAM:PF06884
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:377187493..377188520

Molecular Weight (calculated)

27789.0 Da

IEP (calculated)

7.797

GRAVY (calculated)

-0.614

Length

248 amino acids

Sequence
(BLAST)

001: MASSDEKPVP TPASTGGDGG PPGKPTTTST MLLDKGAAAL QSLRPVKQMK QHVCTFALYA HDPHRQVETH HYVSRLNQDV LQCPVYDSDD KHARLIGVEY
101: IVSRKIFESL PAEEQKLWHS HAHEIKTGLW ANPWVPSMLG KAELDHMAGT FGKFWCTWQV DRGDRLPLGA PALMVSPQGE RDGAVRPDLV RKRDQKYSFS
201: TEELKVARAD VEVPPEPRPG QADYWVRHHK GFAVDVVPHE MKRHAPFP

Best Arabidopsis Sequence Match ( AT5G45690.1 )
(BLAST)

001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP

Arabidopsis Description

OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.