Factsheet for Solyc03g005940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc09g098120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	Solyc09g098120.2.1	AT2G31985.1	21798944
AT1G29680.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071760.2.1	Tomato	extracellular	76.05	75.42
Solyc02g071770.2.1	Tomato	cytosol	69.33	67.07
VIT_10s0003g02040.t01	Wine grape	cytosol	68.07	66.12
KRH21156	Soybean	nucleus	63.03	61.22
KRH11089	Soybean	plasma membrane	48.32	60.85
AT5G45690.1	Thale cress	nucleus	62.6	60.32
Bra025063.1-P	Field mustard	cytosol	62.18	60.16
CDY39441	Canola	cytosol	62.18	60.16
Bra032330.1-P	Field mustard	cytosol	59.66	59.92
CDY26320	Canola	cytosol	58.4	59.66
AT1G29680.1	Thale cress	cytosol	59.24	59.49
CDY59324	Canola	cytosol	61.34	59.35
CDX99847	Canola	cytosol	58.82	59.07
TraesCS3D01G272000.1	Wheat	cytosol	60.5	58.06
TraesCS3B01G306300.1	Wheat	cytosol	59.66	57.26
HORVU3Hr1G071490.2	Barley	cytosol	59.24	56.85
TraesCS3A01G272700.1	Wheat	cytosol	58.4	56.05
CDX99410	Canola	cytosol	57.98	55.87
AT4G18920.1	Thale cress	cytosol	57.98	55.87
EES03609	Sorghum	cytosol	57.56	55.24
TraesCS3A01G283100.1	Wheat	plastid	57.56	54.8
TraesCS3B01G316800.1	Wheat	plastid	57.56	54.8
Os01t0728700-01	Rice	plastid	57.56	54.8
TraesCS3D01G283100.1	Wheat	plastid	57.56	54.8
Zm00001d043464_P001	Maize	plastid	57.98	54.76
EES03555	Sorghum	plastid	55.88	53.2
Zm00001d011755_P001	Maize	plastid	55.88	53.2
HORVU3Hr1G069140.1	Barley	cytosol	57.14	52.71
Bra012566.1-P	Field mustard	cytosol	47.9	50.89
GSMUA_Achr9P05700_001	Banana	nucleus	40.76	41.1
Solyc09g098120.2.1	Tomato	cytosol	36.13	36.13
CDY01566	Canola	cytosol	12.61	34.09
Bra013362.1-P	Field mustard	cytosol	57.56	28.36
CDX78906	Canola	cytosol	57.56	28.25

Protein Annotations

EnsemblPlants:Solyc03g005940.2.1	EnsemblPlantsGene:Solyc03g005940.2	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1	PFAM:PF06884
UniParc:UPI0002767616	UniProt:K4BE17	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:-:633860..635554

Molecular Weight (calculated)

27325.9 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.581

Length

238 amino acids

Sequence
(BLAST)

001: MASTTKGHEQ VPPGEPMTIG QHMLDKGAQM MQSLKPIKQM NQHVCTFAMY SHDMSRQIET HHYVTRVNQD FLQCAVYDSD ESNGRLIGVE YILSDRIFES
101: LPQEEQKLWH SHAHEIKSGL WVNPRVPEMV IRPELENLTK TYGKFWCTWQ TDRGDKLPIG PPSLMMSPQP VDLGIVKIGL VKKRDDKYNL STDTMKTVRT
201: DLSEPTRLNP MADYWVKHGK GFAIDVDDVE MKKIAPFP

Best Arabidopsis Sequence Match ( AT5G45690.1 )
(BLAST)

001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP

Arabidopsis Description

OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.