CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH31541
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	KRH31541	AT2G31985.1	21798944
AT1G29680.1	KRH03466	AT3G47620.1	21798944
AT1G29680.1	KRH54542	AT3G47620.1	21798944
AT1G29680.1	KRH56919	AT3G47620.1	21798944
AT1G29680.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11089	Soybean	plasma membrane	66.94	86.77
VIT_10s0003g02040.t01	Wine grape	cytosol	70.2	70.2
PGSC0003DMT400073143	Potato	cytosol	62.86	64.17
Solyc02g071760.2.1	Tomato	extracellular	62.86	64.17
Solyc03g005940.2.1	Tomato	cytosol	61.22	63.03
Bra025063.1-P	Field mustard	cytosol	59.59	59.35
CDY39441	Canola	cytosol	59.59	59.35
TraesCS3D01G283100.1	Wheat	plastid	60.41	59.2
TraesCS3B01G316800.1	Wheat	plastid	60.41	59.2
CDY59324	Canola	cytosol	59.18	58.94
Os01t0728700-01	Rice	plastid	60.0	58.8
TraesCS3A01G283100.1	Wheat	plastid	60.0	58.8
AT5G45690.1	Thale cress	nucleus	59.18	58.7
HORVU3Hr1G069140.1	Barley	cytosol	61.22	58.14
CDY26320	Canola	cytosol	55.1	57.94
CDX99847	Canola	cytosol	55.51	57.38
Bra032330.1-P	Field mustard	cytosol	55.51	57.38
CDX99410	Canola	cytosol	57.55	57.09
TraesCS3B01G306300.1	Wheat	cytosol	57.55	56.85
TraesCS3D01G272000.1	Wheat	cytosol	57.55	56.85
AT1G29680.1	Thale cress	cytosol	54.69	56.54
EES03555	Sorghum	plastid	57.55	56.4
AT4G18920.1	Thale cress	cytosol	56.73	56.28
HORVU3Hr1G071490.2	Barley	cytosol	56.73	56.05
TraesCS3A01G272700.1	Wheat	cytosol	56.33	55.65
Zm00001d011755_P001	Maize	plastid	56.73	55.6
EES03609	Sorghum	cytosol	55.51	54.84
Zm00001d043464_P001	Maize	plastid	55.1	53.57
Bra012566.1-P	Field mustard	cytosol	46.94	51.34
GSMUA_Achr9P05700_001	Banana	nucleus	40.0	41.53
KRH31541	Soybean	nucleus	35.1	36.75
CDY01566	Canola	cytosol	12.65	35.23
Bra013362.1-P	Field mustard	cytosol	57.55	29.19
CDX78906	Canola	cytosol	57.55	29.07

Protein Annotations

EMBL:ACUP02008341	EMBL:BT089647	EnsemblPlants:KRH21156	EnsemblPlantsGene:GLYMA_13G223700	EntrezGene:100305847	InterPro:OBAP-like
PANTHER:PTHR31360	PANTHER:PTHR31360:SF1	PFAM:PF06884	ProteinID:KRH21156	ProteinID:KRH21156.1	UniParc:UPI0001B150A9
UniProt:C6SWV3	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:33663284..33664607

Molecular Weight (calculated)

27638.1 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.447

Length

245 amino acids

Sequence
(BLAST)

001: MASTDKSPDP TPAKGPDPTP GKPMSVGQHV IDKSAMMVQS LDPIKQMSQH VCSFAIYSHD MSRQIETHHY CSRLHQNFIQ CAVYDSDESK ARLLGVEYIV
101: PADVFEAFPP EEQKLWHSHA YEIKSGLLVN PRVPEVVAMP ELENLAQTYG KFWCTWQVDR GDRLPMGAPA LMMSPQAASP GLVRAELVLE RDAKYNFSSK
201: SLKSSRLEIP EPEMINPLAD YWKQHGKGFV IDIEETEMKL RPPFP

Best Arabidopsis Sequence Match ( AT5G45690.1 )
(BLAST)

001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP

Arabidopsis Description

OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.