CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES05730
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	EES05730	AT2G31985.1	21798944
AT1G29680.1	EER88112	AT3G47620.1	21798944
AT1G29680.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043464_P001	Maize	plastid	91.53	90.08
TraesCS3A01G272700.1	Wheat	cytosol	78.63	78.63
TraesCS3D01G272000.1	Wheat	cytosol	78.23	78.23
TraesCS3B01G306300.1	Wheat	cytosol	77.82	77.82
HORVU3Hr1G071490.2	Barley	cytosol	77.82	77.82
EES03555	Sorghum	plastid	62.9	62.4
VIT_10s0003g02040.t01	Wine grape	cytosol	60.89	61.63
PGSC0003DMT400073145	Potato	nucleus	38.31	60.9
Solyc02g071770.2.1	Tomato	cytosol	57.66	58.13
Solyc03g005940.2.1	Tomato	cytosol	55.24	57.56
PGSC0003DMT400073143	Potato	cytosol	54.44	56.25
KRH21156	Soybean	nucleus	54.84	55.51
CDX99410	Canola	cytosol	55.24	55.47
Solyc02g071760.2.1	Tomato	extracellular	53.63	55.42
AT4G18920.1	Thale cress	cytosol	54.44	54.66
CDY59324	Canola	cytosol	54.03	54.47
CDY39441	Canola	cytosol	54.03	54.47
Bra025063.1-P	Field mustard	cytosol	54.03	54.47
AT5G45690.1	Thale cress	nucleus	54.03	54.25
CDY26320	Canola	cytosol	48.39	51.5
KRH11089	Soybean	plasma membrane	39.11	51.32
CDX99847	Canola	cytosol	48.79	51.05
Bra012566.1-P	Field mustard	cytosol	45.97	50.89
Bra032330.1-P	Field mustard	cytosol	48.39	50.63
AT1G29680.1	Thale cress	cytosol	47.58	49.79
GSMUA_Achr9P05700_001	Banana	nucleus	43.15	45.34
PGSC0003DMT400073144	Potato	cytosol	18.55	43.81
CDY01566	Canola	cytosol	12.5	35.23
EES05730	Sorghum	cytosol	32.26	33.61
Bra013362.1-P	Field mustard	cytosol	55.24	28.36
CDX78906	Canola	cytosol	55.24	28.25

Protein Annotations

EnsemblPlants:EES03609	EnsemblPlantsGene:SORBI_3003G295600	EntrezGene:8068711	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF9
PFAM:PF06884	ProteinID:EES03609	ProteinID:EES03609.1	RefSeq:XP_002458489.1	SEG:seg	UniParc:UPI0001A84C7C
UniProt:C5XK37	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:62785920..62787352

Molecular Weight (calculated)

27824.9 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.542

Length

248 amino acids

Sequence
(BLAST)

001: MASSDGKPVP TPASEGGTAP PGQPTTVASK VLDMGAAAMQ SLRPVKQVKQ HVCTFALYSH DPKRQVETHH YVSRLNQDFL QCAVYDSDRA DARLIGVEYI
101: VSRKIFDSLP AEEQRLWHSH AHEIRSGLWT SPHMPVPLEK AELDHLATTF GKFWCTWQVD RGDRLPLGAP PLMVSPQADP AATVRPDLVR RRDDRYGFST
201: EELRVARADV EAPAEEHPAQ QADYWLRHRK GFAVDVVPHE MKRHAAFP

Best Arabidopsis Sequence Match ( AT5G45690.1 )
(BLAST)

001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP

Arabidopsis Description

OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.