Factsheet for TraesCS3A01G272700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G239600.1
TraesCS5A01G243900.1
TraesCS5B01G241900.1
TraesCS5D01G250600.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	TraesCS5A01G239600.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5A01G243900.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5B01G241900.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS5D01G250600.1	AT2G31985.1	21798944
AT1G29680.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G29680.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G272000.1	Wheat	cytosol	94.76	94.76
TraesCS3B01G306300.1	Wheat	cytosol	94.35	94.35
HORVU3Hr1G071490.2	Barley	cytosol	93.55	93.55
EES03609	Sorghum	cytosol	78.63	78.63
Zm00001d043464_P001	Maize	plastid	79.84	78.57
TraesCS3A01G283100.1	Wheat	plastid	64.11	63.6
VIT_10s0003g02040.t01	Wine grape	cytosol	61.29	62.04
PGSC0003DMT400073145	Potato	nucleus	38.71	61.54
Solyc02g071770.2.1	Tomato	cytosol	59.27	59.76
PGSC0003DMT400073143	Potato	cytosol	56.85	58.75
Solyc03g005940.2.1	Tomato	cytosol	56.05	58.4
Solyc02g071760.2.1	Tomato	extracellular	56.05	57.92
Bra025063.1-P	Field mustard	cytosol	56.85	57.32
CDY39441	Canola	cytosol	56.85	57.32
CDY59324	Canola	cytosol	56.85	57.32
KRH21156	Soybean	nucleus	55.65	56.33
CDX99410	Canola	cytosol	56.05	56.28
AT4G18920.1	Thale cress	cytosol	54.84	55.06
AT5G45690.1	Thale cress	nucleus	54.84	55.06
KRH11089	Soybean	plasma membrane	39.92	52.38
AT1G29680.1	Thale cress	cytosol	49.6	51.9
CDX99847	Canola	cytosol	49.6	51.9
CDY26320	Canola	cytosol	48.39	51.5
Bra032330.1-P	Field mustard	cytosol	48.79	51.05
Bra012566.1-P	Field mustard	cytosol	45.56	50.45
GSMUA_Achr9P05700_001	Banana	nucleus	43.55	45.76
PGSC0003DMT400073144	Potato	cytosol	19.35	45.71
CDY01566	Canola	cytosol	14.92	42.05
TraesCS5A01G243900.1	Wheat	cytosol	37.9	39.83
TraesCS5A01G239600.1	Wheat	cytosol	32.66	36.32
Bra013362.1-P	Field mustard	cytosol	56.45	28.99
CDX78906	Canola	cytosol	56.45	28.87

Protein Annotations

EnsemblPlants:TraesCS3A01G272700.1	EnsemblPlantsGene:TraesCS3A01G272700	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF9	PFAM:PF06884
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:501898095..501898841

Molecular Weight (calculated)

27844.9 Da

IEP (calculated)

7.448

GRAVY (calculated)

-0.621

Length

248 amino acids

Sequence
(BLAST)

001: MASSDEKPVP TPASTGGDGG PPGRPTTTST MLLDKGAAAL QSLRPVKQMK QHVCTFALYA HDPRRQVETH HYVSRLNQDV LQCPVYDSDD KHARLIGVEY
101: IVSREIFESL PAEEQRLWHS HAHEVKAGLW ANPWVPSVLG KPELDHMAGT FGKFWCTWQV DRGDRLPLGA PALMVSPQGE RDGAVRPDLV RRRDQRYSFS
201: TEELRAARAD VEVPAEPRPG QADYWVRHHK GFAVDVVPHE MKRHAPFP

Best Arabidopsis Sequence Match ( AT5G45690.1 )
(BLAST)

001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP

Arabidopsis Description

OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.