CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943
CDY66704
CDY68306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29680.1	CDY66704	AT2G31985.1	21798944
AT1G29680.1	CDY68306	AT2G31985.1	21798944
AT1G29680.1	CDY24170	AT3G47620.1	21798944
AT1G29680.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032330.1-P	Field mustard	cytosol	99.14	97.47
CDX99847	Canola	cytosol	98.28	96.62
AT1G29680.1	Thale cress	cytosol	84.55	83.12
Solyc02g071760.2.1	Tomato	extracellular	61.8	60.0
PGSC0003DMT400073143	Potato	cytosol	60.94	59.17
Solyc03g005940.2.1	Tomato	cytosol	59.66	58.4
VIT_10s0003g02040.t01	Wine grape	cytosol	61.37	58.37
KRH11089	Soybean	plasma membrane	45.92	56.61
KRH21156	Soybean	nucleus	57.94	55.1
CDY59324	Canola	cytosol	57.08	54.06
CDY39441	Canola	cytosol	56.65	53.66
TraesCS3B01G316800.1	Wheat	plastid	55.36	51.6
CDX99410	Canola	cytosol	54.51	51.42
TraesCS3D01G283100.1	Wheat	plastid	54.94	51.2
Os01t0728700-01	Rice	plastid	54.51	50.8
TraesCS3A01G283100.1	Wheat	plastid	54.08	50.4
HORVU3Hr1G069140.1	Barley	cytosol	55.79	50.39
EES03555	Sorghum	plastid	52.79	49.2
Zm00001d011755_P001	Maize	plastid	52.79	49.2
TraesCS3D01G272000.1	Wheat	cytosol	51.93	48.79
EES03609	Sorghum	cytosol	51.5	48.39
TraesCS3B01G306300.1	Wheat	cytosol	51.5	48.39
TraesCS3A01G272700.1	Wheat	cytosol	51.5	48.39
HORVU3Hr1G071490.2	Barley	cytosol	50.64	47.58
Zm00001d043464_P001	Maize	plastid	50.21	46.43
CDY47277	Canola	cytosol	36.91	35.68
CDY10117	Canola	cytosol	36.91	35.68
CDY66704	Canola	cytosol	33.91	32.78
CDY68306	Canola	cytosol	33.48	32.37
GSMUA_Achr9P05700_001	Banana	nucleus	32.62	32.2
CDX78906	Canola	cytosol	54.51	26.19
CDY01566	Canola	cytosol	9.44	25.0

Protein Annotations

EnsemblPlants:CDY26320	EnsemblPlantsGene:GSBRNA2T00035023001	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1	PFAM:PF06884
ProteinID:CDY26320	ProteinID:CDY26320.1	UniParc:UPI0004EF2B5B	UniProt:A0A078GIL7	MapMan:35.1	:

Description

BnaA09g26710DBnaA09g26710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIL7]

Coordinates

chrLK032187:+:539946..540941

Molecular Weight (calculated)

26743.8 Da

IEP (calculated)

5.851

GRAVY (calculated)

-0.535

Length

233 amino acids

Sequence
(BLAST)

001: MASSGDENQV APGDPVTVST RMIDAGTTIM QRRLPVKQMN CHVSTFAIYS GDMSRQIETH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYENL
101: PQDEQKLWHS HAYEVKSGSW AYPRLPEILA TPELKNIAKT YGKFWCTWQI DRGDKLPVGA PELMMSPQGV LRPELVKIRD EKYNISTDEL KHQRAEIAEP
201: EWINPMADYW KQHGKCFVID IATVDMKSNE KFP

Best Arabidopsis Sequence Match ( AT1G29680.1 )
(BLAST)

001: MALSGGDDQV PPGGPMTVST RLIDAGSTIM QRRLPVKQMN THVSTFAIYG GDMSRLIGTH HYVHRVNDEF LQCAVYASDR SDAPLIGIEY VISDRLYETL
101: SEDEQKLWHS HAYEVKSGSW AYPRLPEVVA APELKNIAKT YGKFWCTWQI DRGDKLPMGA PELMMSPQGV GQGVLRPELV KRRDEKYNIS TDDLKHTRAE
201: IAEPEWINPM ADYWKQHGKC FVLDIATVEM NRHAQFP

Arabidopsis Description

OBAP2COil body-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9C7N3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.