Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G285600.1 | Wheat | nucleus | 97.28 | 98.0 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 96.29 | 96.77 |
| HORVU6Hr1G075650.1 | Barley | nucleus | 95.05 | 95.52 |
| Os06t0226700-01 | Rice | nucleus | 70.79 | 73.9 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 68.81 | 73.35 |
| EER88112 | Sorghum | nucleus | 71.04 | 72.84 |
| Zm00001d044836_P001 | Maize | nucleus | 59.65 | 67.51 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 44.31 | 65.81 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 41.09 | 61.94 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 46.29 | 50.82 |
| PGSC0003DMT400083148 | Potato | nucleus | 47.52 | 46.83 |
| Solyc06g070900.2.1 | Tomato | nucleus | 48.02 | 46.63 |
| Solyc03g116320.2.1 | Tomato | nucleus | 46.78 | 46.21 |
| CDY36943 | Canola | nucleus | 21.53 | 46.03 |
| PGSC0003DMT400001613 | Potato | nucleus | 47.03 | 45.89 |
| KRH63357 | Soybean | nucleus | 43.32 | 43.97 |
| KRH54542 | Soybean | nucleus | 43.81 | 43.38 |
| KRH56919 | Soybean | nucleus | 43.81 | 42.55 |
| KRH03466 | Soybean | nucleus | 43.32 | 42.37 |
| CDY24170 | Canola | nucleus | 24.75 | 41.15 |
| Bra018126.1-P | Field mustard | nucleus | 43.07 | 37.34 |
| AT3G47620.1 | Thale cress | nucleus | 44.31 | 36.61 |
| TraesCS6A01G233800.1 | Wheat | plastid | 17.57 | 34.98 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 16.58 | 33.84 |
| TraesCS2A01G376000.1 | Wheat | plastid | 17.08 | 33.66 |
| TraesCS4A01G222700.1 | Wheat | nucleus, plastid | 25.99 | 27.27 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 22.77 | 27.22 |
| TraesCS5A01G121800.1 | Wheat | nucleus | 28.22 | 27.21 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 22.52 | 26.69 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 18.81 | 25.68 |
Protein Annotations
| MapMan:15.5.19 | ncoils:Coil | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008283 | GO:GO:0009719 |
| GO:GO:0009735 | GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009791 | GO:GO:0010029 | GO:GO:0010229 |
| GO:GO:0031347 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 |
| InterPro:TF_TCP_subgr | EnsemblPlantsGene:TraesCS6A01G306500 | EnsemblPlants:TraesCS6A01G306500.1 | InterPro:Transcription_factor_TCP | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:540144631..540145845
Molecular Weight (calculated)
40783.5 Da
IEP (calculated)
9.414
GRAVY (calculated)
-0.498
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGTSGGG GNGAAAGGAA GGEMQVRKAV PKRTSTKDRH TKVEGRGRRI RMPALCAARV FQLTRELGHK
101: TDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSLSIPAHL RGALPSPGVR FGSRADAWDR VVGLGYPPEG PASSSSTPSP LLLNFHSGSV
201: GLDVQPSPSA AAAAAAADLS RKRRWEQEMQ QQQQQQHQQQ QQQQQYQQQM AGYTQSQMPG TVWMVPSNYS QGSGAPSGGG NGGGGGGSGE SIWTFPQVGS
301: AGAAAAVYRG SVPSGLHFMN FPTPMALLPG QQLGLGPVGG SGGGAGGSEG QMGILAALNA YRTQAAEAAA GQGGGGGGGS SSQQQHGGGG GGGERHESMS
401: TSES
101: TDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSLSIPAHL RGALPSPGVR FGSRADAWDR VVGLGYPPEG PASSSSTPSP LLLNFHSGSV
201: GLDVQPSPSA AAAAAAADLS RKRRWEQEMQ QQQQQQHQQQ QQQQQYQQQM AGYTQSQMPG TVWMVPSNYS QGSGAPSGGG NGGGGGGSGE SIWTFPQVGS
301: AGAAAAVYRG SVPSGLHFMN FPTPMALLPG QQLGLGPVGG SGGGAGGSEG QMGILAALNA YRTQAAEAAA GQGGGGGGGS SSQQQHGGGG GGGERHESMS
401: TSES
001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
Arabidopsis Description
TCP14Transcription factor TCP14 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.