Factsheet for TraesCS1B01G284400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2A01G528100.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS2D01G531000.1
TraesCS7A01G246900.1
TraesCS7A01G427800.1
TraesCS7B01G144400.1
TraesCS7D01G245700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT5G06370.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT5G06370.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT5G06370.1	TraesCS2A01G528100.1	AT3G55290.1	21798944
AT5G06370.1	TraesCS2D01G531000.1	AT3G55290.1	21798944
AT5G06370.1	TraesCS7A01G246900.1	AT3G55290.1	21798944
AT5G06370.1	TraesCS7A01G427800.1	AT3G55290.1	21798944
AT5G06370.1	TraesCS7B01G144400.1	AT3G55290.1	21798944
AT5G06370.1	TraesCS7D01G245700.1	AT3G55290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G274800.1	Wheat	cytosol	88.04	88.04
TraesCS1A01G275200.1	Wheat	cytosol	86.96	86.96
HORVU1Hr1G074130.1	Barley	cytosol	85.51	85.82
EES19605	Sorghum	cytosol	78.62	78.91
VIT_08s0105g00270.t01	Wine grape	cytosol	64.49	67.94
PGSC0003DMT400055040	Potato	cytosol	63.41	67.83
Solyc01g007110.2.1	Tomato	cytosol	63.04	67.44
Bra005893.1-P	Field mustard	cytosol	63.04	66.92
AT5G06370.1	Thale cress	cytosol	62.68	66.8
CDY55757	Canola	cytosol	62.68	66.54
CDX81002	Canola	cytosol	62.32	66.15
KRH32851	Soybean	cytosol	61.59	65.64
KRH72187	Soybean	cytosol	61.23	65.25
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.64	48.58
TraesCS5B01G315900.1	Wheat	cytosol	46.38	47.76
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	26.09	47.68

Protein Annotations

EnsemblPlants:TraesCS1B01G284400.1	EnsemblPlantsGene:TraesCS1B01G284400	GO:GO:0008150	GO:GO:0009987	GO:GO:0071284	InterPro:LRAT-like_dom
PANTHER:PTHR13943	PANTHER:PTHR13943:SF44	PFAM:PF04970	SEG:seg	MapMan:35.2	:

Description

No Description!

Coordinates

chr1B:-:493867538..493869353

Molecular Weight (calculated)

29286.1 Da

IEP (calculated)

7.653

GRAVY (calculated)

0.190

Length

276 amino acids

Sequence
(BLAST)

001: MGLLSNRIGK ESLKAGDHIY SWRAAWVYAH HGIYVGDDKV IHFTRGRDQE VGTGTVIDFL LVSSGPTRST TPCLVCSSEE ATTTAETNGV TSSCLSCFLA
101: GGALYRFEYD VNPALFLAKV RGGTCTLAAT DPDEVVVRRA KYLLTNGFRC YSLFKNNCED FAIYCKTGLL VAEQGNVGLG QSGQAVSIIG GPLAAVVSTP
201: FRLVTTNIYG VAVMAVGVYC VSRYAGDIGN RRDVLKVEVE DLTAGLASGR IRPANISQLA TPGQVQVPAV TTLVAA

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.