Factsheet for VIT_08s0105g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01
VIT_08s0040g01190.t01
VIT_08s0040g01200.t01
VIT_08s0040g01210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT5G06370.1	VIT_08s0040g01190.t01	AT3G55290.1	21798944
AT5G06370.1	VIT_08s0040g01200.t01	AT3G55290.1	21798944
AT5G06370.1	VIT_08s0040g01210.t01	AT3G55290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055040	Potato	cytosol	79.01	80.23
Bra005893.1-P	Field mustard	cytosol	78.63	79.23
CDX81002	Canola	cytosol	78.63	79.23
Solyc01g007110.2.1	Tomato	cytosol	77.86	79.07
CDY55757	Canola	cytosol	78.24	78.85
AT5G06370.1	Thale cress	cytosol	76.34	77.22
KRH32851	Soybean	cytosol	75.95	76.83
KRH72187	Soybean	cytosol	74.43	75.29
EES19605	Sorghum	cytosol	69.47	66.18
TraesCS1B01G284400.1	Wheat	cytosol	67.94	64.49
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	37.02	64.24
TraesCS1A01G275200.1	Wheat	cytosol	67.18	63.77
TraesCS1D01G274800.1	Wheat	cytosol	66.79	63.41
HORVU1Hr1G074130.1	Barley	cytosol	66.41	63.27
VIT_04s0069g01180.t01	Wine grape	cytosol	52.29	56.15
VIT_15s0046g00120.t01	Wine grape	cytosol	49.24	49.24
VIT_00s0270g00030.t01	Wine grape	cytosol	48.09	45.16

Protein Annotations

EntrezGene:100260806	wikigene:100260806	Gene3D:3.90.1720.10	MapMan:35.2	ProteinID:CBI22789	ProteinID:CBI22789.3
UniProt:D7SY06	EMBL:FN595245	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EntrezGene:LOC100260806
wikigene:LOC100260806	InterPro:LRAT-like_dom	PFAM:PF04970	PANTHER:PTHR13943	PANTHER:PTHR13943:SF44	InterPro:Papain_like_cys_pep_sf
SUPFAM:SSF54001	TIGR:TC52439	TIGR:TC65155	UniParc:UPI00015CBD26	ArrayExpress:VIT_08s0105g00270	EnsemblPlantsGene:VIT_08s0105g00270
EnsemblPlants:VIT_08s0105g00270.t01	unigene:Vvi.11424	unigene:Vvi.7116	RefSeq:XP_002266364	RefSeq:XP_002266364.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:7369203..7372081

Molecular Weight (calculated)

28033.9 Da

IEP (calculated)

7.736

GRAVY (calculated)

0.144

Length

262 amino acids

Sequence
(BLAST)

001: MGLLSNRVDK ESLKPGDHIY SWRTAYIYSH HGIYVGNNEV IHFTRHGQEV GTGTVLDLLL VSSGPARRHQ VPCPTCTPPE GGHGVVSSCL NCFLAGGILY
101: RFEYSVSSAL FLAKARGGTC TLAVSDPNEI VVHRATYLLN NGFGCYNVFK NNCEDFAIYC KTGLLVIDQG TIGRSGQAVS IIGGPLAAVL STPLRLVTTN
201: IYGMAATAVG VYCASRFAAD IGMRKDVAKV EVEDLTRRLA TGLIQVIEPG TIILPPGPPP DH

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.