Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0054g00450.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | VIT_09s0054g00450.t01 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 52.3 | 51.75 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 50.88 | 50.35 |
| GSMUA_Achr3P03770_001 | Banana | cytosol | 9.89 | 49.12 |
| KRH71588 | Soybean | cytosol | 48.76 | 48.94 |
| KRH71621 | Soybean | cytosol | 48.41 | 48.58 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 47.35 | 48.03 |
| Os08t0510400-01 | Rice | plastid | 47.35 | 47.18 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 47.0 | 47.0 |
| EES14264 | Sorghum | cytosol, plastid | 45.94 | 46.59 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 46.29 | 46.29 |
| TraesCS7A01G246900.1 | Wheat | plastid | 46.29 | 46.29 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 45.58 | 46.24 |
| AT3G55290.1 | Thale cress | cytosol | 45.58 | 46.07 |
| CDY29203 | Canola | cytosol | 45.23 | 46.04 |
| Bra040871.1-P | Field mustard | cytosol | 45.23 | 46.04 |
| TraesCS2D01G531000.1 | Wheat | plastid | 45.23 | 45.88 |
| Zm00001d031453_P001 | Maize | cytosol | 45.23 | 45.71 |
| AT3G55310.1 | Thale cress | cytosol | 44.88 | 45.52 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 44.88 | 45.36 |
| CDY07814 | Canola | cytosol | 44.52 | 45.32 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 44.88 | 45.04 |
| Bra014762.1-P | Field mustard | cytosol | 44.52 | 45.0 |
| Bra014757.1-P | Field mustard | cytosol | 44.52 | 45.0 |
| Bra014761.1-P | Field mustard | cytosol | 40.28 | 44.88 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 44.17 | 44.64 |
| Bra036706.1-P | Field mustard | cytosol | 45.23 | 44.6 |
| AT1G63380.2 | Thale cress | cytosol | 45.23 | 44.6 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 45.23 | 44.44 |
| Bra002097.1-P | Field mustard | cytosol | 43.46 | 44.24 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 43.46 | 43.93 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 43.82 | 43.66 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 43.46 | 43.62 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 44.17 | 43.55 |
| Bra014760.1-P | Field mustard | plastid | 34.98 | 43.04 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 47.0 | 42.63 |
| CDY02920 | Canola | cytosol | 35.34 | 42.19 |
| CDY40209 | Canola | peroxisome | 45.94 | 41.67 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 45.58 | 41.35 |
| KRH76339 | Soybean | cytosol | 16.25 | 40.71 |
| CDY07809 | Canola | plastid | 21.2 | 40.54 |
| Bra024488.1-P | Field mustard | plastid | 20.85 | 39.86 |
| CDY29207 | Canola | plastid | 20.85 | 39.86 |
| HORVU2Hr1G116450.1 | Barley | plastid | 43.46 | 38.8 |
| Bra007151.1-P | Field mustard | cytosol | 45.94 | 29.02 |
| CDX91138 | Canola | cytosol, plastid | 15.9 | 27.95 |
| CDX73391 | Canola | cytosol | 46.29 | 27.93 |
| VIT_14s0068g01760.t01 | Wine grape | cytosol | 20.49 | 21.8 |
Protein Annotations
| ArrayExpress:VIT_08s0040g01210 | EMBL:FN596008 | EnsemblPlants:VIT_08s0040g01210.t01 | EnsemblPlantsGene:VIT_08s0040g01210 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf |
| InterPro:SDR_fam | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF2 | PFAM:PF00106 | PRINTS:PR00081 | ProteinID:CCB57111 |
| ProteinID:CCB57111.1 | SUPFAM:SSF51735 | UniParc:UPI0002109378 | UniProt:F6HR62 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:-:12221244..12230964
Molecular Weight (calculated)
31455.9 Da
IEP (calculated)
7.197
GRAVY (calculated)
-0.023
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFYNFIYKN ISIYFHLKKA MANQESNNPE PWNNLEGKVI LVTGASSSLD RELCLNLARV GCKIVAVAHR TDRLKSLCDE INHPAFSGSP LNPNTTVRAV
101: AVEFDVTADD PTIDASVHKA WDGFGRIDVL INNVGFRGTV KNSLELDEEE WGEGMKTNLN GTWLVSKHVM AIEFGMYNVR VNAISPGLFK SEITEGLLQK
201: SWLNNVTLKM VPLQTFGTLD PAVTSLVRFL VHDSSRYITG NILIVDAGSS LPKFGLGLGP LAFPHWNKKR PLVFEWAPLL IQV
101: AVEFDVTADD PTIDASVHKA WDGFGRIDVL INNVGFRGTV KNSLELDEEE WGEGMKTNLN GTWLVSKHVM AIEFGMYNVR VNAISPGLFK SEITEGLLQK
201: SWLNNVTLKM VPLQTFGTLD PAVTSLVRFL VHDSSRYITG NILIVDAGSS LPKFGLGLGP LAFPHWNKKR PLVFEWAPLL IQV
001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.