Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G075110.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | HORVU5Hr1G075110.3 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G245700.1 | Wheat | cytosol | 88.14 | 97.17 |
| TraesCS7A01G246900.1 | Wheat | plastid | 87.5 | 96.47 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 87.18 | 96.11 |
| EES14264 | Sorghum | cytosol, plastid | 73.72 | 82.44 |
| Zm00001d031453_P001 | Maize | cytosol | 73.08 | 81.43 |
| Os08t0510400-01 | Rice | plastid | 74.04 | 81.34 |
| HORVU2Hr1G116450.1 | Barley | plastid | 71.47 | 70.35 |
| GSMUA_Achr3P03760_001 | Banana | cytosol | 59.62 | 65.72 |
| GSMUA_Achr9P12400_001 | Banana | cytosol | 59.62 | 64.81 |
| GSMUA_Achr3P28470_001 | Banana | cytosol, mitochondrion | 58.33 | 64.08 |
| KRH71588 | Soybean | cytosol | 57.05 | 63.12 |
| GSMUA_Achr11P... | Banana | mitochondrion | 56.41 | 63.08 |
| Solyc12g100220.1.1 | Tomato | plastid | 54.49 | 62.73 |
| PGSC0003DMT400088158 | Potato | cytosol | 51.6 | 62.65 |
| PGSC0003DMT400014256 | Potato | cytosol, nucleus, plastid | 22.12 | 62.16 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 53.53 | 61.85 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 53.85 | 61.76 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 56.41 | 61.54 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 53.21 | 61.48 |
| PGSC0003DMT400072205 | Potato | cytosol | 57.05 | 61.38 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 56.09 | 61.19 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 52.88 | 60.89 |
| PGSC0003DMT400018472 | Potato | cytosol | 53.85 | 60.87 |
| GSMUA_Achr3P11750_001 | Banana | cytosol | 52.24 | 60.82 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 26.28 | 60.74 |
| Solyc10g080890.1.1 | Tomato | cytosol | 56.41 | 60.69 |
| KRH71621 | Soybean | cytosol | 54.81 | 60.64 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 44.55 | 60.43 |
| Solyc10g080900.1.1 | Tomato | plastid | 55.45 | 60.28 |
| Solyc10g006860.2.1 | Tomato | plastid | 53.21 | 60.14 |
| AT3G55290.1 | Thale cress | cytosol | 53.85 | 60.0 |
| CDY07809 | Canola | plastid | 28.21 | 59.46 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 51.28 | 59.04 |
| Bra002097.1-P | Field mustard | cytosol | 52.56 | 58.99 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 53.21 | 58.87 |
| CDY29207 | Canola | plastid | 27.88 | 58.78 |
| Bra024488.1-P | Field mustard | plastid | 27.88 | 58.78 |
| AT3G55310.1 | Thale cress | cytosol | 52.56 | 58.78 |
| Solyc10g078360.1.1 | Tomato | cytosol | 54.81 | 58.76 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 50.64 | 58.3 |
| CDY29203 | Canola | cytosol | 51.92 | 58.27 |
| Bra040871.1-P | Field mustard | cytosol | 51.92 | 58.27 |
| PGSC0003DMT400021572 | Potato | cytosol, mitochondrion | 23.08 | 58.06 |
| Solyc12g045030.1.1 | Tomato | nucleus | 50.32 | 57.93 |
| AT1G63380.2 | Thale cress | cytosol | 53.21 | 57.84 |
| CDY07814 | Canola | cytosol | 51.28 | 57.55 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 51.6 | 57.5 |
| Bra014762.1-P | Field mustard | cytosol | 51.6 | 57.5 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 16.67 | 57.14 |
| Bra036706.1-P | Field mustard | cytosol | 52.56 | 57.14 |
| PGSC0003DMT400062814 | Potato | cytosol | 18.27 | 57.0 |
| Solyc12g044940.1.1 | Tomato | nucleus | 49.36 | 56.83 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 52.24 | 56.79 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 50.96 | 56.79 |
| Solyc12g100280.1.1 | Tomato | cytosol | 23.4 | 56.59 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 50.64 | 56.43 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 51.92 | 56.25 |
| Bra014757.1-P | Field mustard | cytosol | 50.32 | 56.07 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 50.96 | 55.99 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 50.0 | 55.32 |
| Bra014760.1-P | Field mustard | plastid | 40.06 | 54.35 |
| Bra014761.1-P | Field mustard | cytosol | 44.23 | 54.33 |
| PGSC0003DMT400021571 | Potato | cytosol | 30.13 | 54.02 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 52.56 | 52.56 |
| CDY40209 | Canola | peroxisome | 51.28 | 51.28 |
| CDY02920 | Canola | cytosol | 38.78 | 51.05 |
| Solyc12g036510.1.1 | Tomato | cytosol | 35.58 | 47.03 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 42.63 | 47.0 |
| KRH76339 | Soybean | cytosol | 14.74 | 40.71 |
| Bra007151.1-P | Field mustard | cytosol | 51.6 | 35.94 |
| CDX73391 | Canola | cytosol | 52.56 | 34.97 |
| CDX91138 | Canola | cytosol, plastid | 14.74 | 28.57 |
| HORVU7Hr1G092130.2 | Barley | cytosol, nucleus, plastid | 21.47 | 25.09 |
| HORVU3Hr1G097170.1 | Barley | plastid | 21.47 | 24.81 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | UniProt:A0A287WGB7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:HORVU7Hr1G050760 | EnsemblPlants:HORVU7Hr1G050760.2 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF2 |
| InterPro:SDR_fam | SMART:SM00822 | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | SignalP:SignalP-noTM | UniParc:UPI000B47AF96 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:186264598..186269317
Molecular Weight (calculated)
33018.0 Da
IEP (calculated)
9.059
GRAVY (calculated)
0.313
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: WLCALESRVT LLLTSTTTQC VATQLYFPAM ASSLPEKAGV SPWSKLEGQV VLVTGASSGI GRDFCLDLAR AGCRVVAAAR RADRLRSLCD EINASAAAVA
101: SLPWAVAVEL DVAAGGSAVE AAVQRAWDAF GRIDVLINNA GLRGGVHSSL DWPEDEWDKL IKTNLTGLWL VAKHVCRHMR DAKIKGSVIN ISSVAGLNRG
201: NLPGSIGYAS SKSAVHSVTK LMALELGAYG IRVNAIAPGI FQSEITAPLL QKRWLSTVVS KIVPLKTNGT TDPALTSLVR FLIHEKASYI TGNIFIVDSG
301: VTVPGVPIFS SL
101: SLPWAVAVEL DVAAGGSAVE AAVQRAWDAF GRIDVLINNA GLRGGVHSSL DWPEDEWDKL IKTNLTGLWL VAKHVCRHMR DAKIKGSVIN ISSVAGLNRG
201: NLPGSIGYAS SKSAVHSVTK LMALELGAYG IRVNAIAPGI FQSEITAPLL QKRWLSTVVS KIVPLKTNGT TDPALTSLVR FLIHEKASYI TGNIFIVDSG
301: VTVPGVPIFS SL
001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP
Arabidopsis Description
F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.