Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc12g055780.1.1 | |
| Solyc12g055790.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | Solyc12g055780.1.1 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | Solyc12g055790.1.1 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 97.79 | 97.79 |
| Solyc12g044940.1.1 | Tomato | nucleus | 86.72 | 86.72 |
| Solyc12g100220.1.1 | Tomato | plastid | 72.32 | 72.32 |
| Solyc10g006860.2.1 | Tomato | plastid | 70.48 | 69.2 |
| CDY29207 | Canola | plastid | 35.42 | 64.86 |
| Bra024488.1-P | Field mustard | plastid | 35.42 | 64.86 |
| Solyc12g100280.1.1 | Tomato | cytosol | 30.26 | 63.57 |
| CDY07809 | Canola | plastid | 34.69 | 63.51 |
| Solyc10g080890.1.1 | Tomato | cytosol | 66.42 | 62.07 |
| Solyc10g080900.1.1 | Tomato | plastid | 65.31 | 61.67 |
| Bra040871.1-P | Field mustard | cytosol | 62.36 | 60.79 |
| CDY29203 | Canola | cytosol | 62.36 | 60.79 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 61.99 | 60.0 |
| Bra014757.1-P | Field mustard | cytosol | 61.99 | 60.0 |
| Bra002097.1-P | Field mustard | cytosol | 61.25 | 59.71 |
| CDY07814 | Canola | cytosol | 61.25 | 59.71 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 61.99 | 59.57 |
| AT3G55310.1 | Thale cress | cytosol | 61.25 | 59.5 |
| Solyc10g078360.1.1 | Tomato | cytosol | 63.84 | 59.45 |
| Bra014762.1-P | Field mustard | cytosol | 61.25 | 59.29 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 60.89 | 58.93 |
| AT3G55290.1 | Thale cress | cytosol | 60.52 | 58.57 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 60.15 | 58.21 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 61.62 | 58.19 |
| Bra036706.1-P | Field mustard | cytosol | 61.25 | 57.84 |
| Bra014761.1-P | Field mustard | cytosol | 53.87 | 57.48 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 60.15 | 57.39 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 59.41 | 57.09 |
| Os08t0510400-01 | Rice | plastid | 59.41 | 56.69 |
| EES14264 | Sorghum | cytosol, plastid | 58.3 | 56.63 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 60.15 | 56.6 |
| Zm00001d031453_P001 | Maize | cytosol | 58.3 | 56.43 |
| TraesCS7A01G246900.1 | Wheat | plastid | 58.67 | 56.18 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 58.67 | 56.18 |
| Bra014760.1-P | Field mustard | plastid | 47.6 | 56.09 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 57.93 | 55.48 |
| AT1G63380.2 | Thale cress | cytosol | 58.67 | 55.4 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 56.09 | 54.48 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 56.09 | 54.48 |
| CDY02920 | Canola | cytosol | 47.6 | 54.43 |
| TraesCS2D01G531000.1 | Wheat | plastid | 55.35 | 53.76 |
| Solyc12g036510.1.1 | Tomato | cytosol | 46.13 | 52.97 |
| CDY40209 | Canola | peroxisome | 60.89 | 52.88 |
| GSMUA_Achr3P03770_001 | Banana | cytosol | 11.07 | 52.63 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 59.41 | 51.6 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 57.93 | 50.32 |
| HORVU2Hr1G116450.1 | Barley | plastid | 55.72 | 47.63 |
| Bra007151.1-P | Field mustard | cytosol | 61.62 | 37.28 |
| CDX73391 | Canola | cytosol | 61.99 | 35.82 |
| CDX91138 | Canola | cytosol, plastid | 18.08 | 30.43 |
| Solyc07g047800.2.1 | Tomato | cytosol, nucleus, plastid | 27.68 | 28.2 |
Protein Annotations
| EnsemblPlants:Solyc12g045030.1.1 | EnsemblPlantsGene:Solyc12g045030.1 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR44375 | PANTHER:PTHR44375:SF1 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 |
| SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0002769883 | UniProt:K4DFI3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr12:-:37460978..37461986
Molecular Weight (calculated)
29182.3 Da
IEP (calculated)
7.925
GRAVY (calculated)
0.097
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPWQDLSGK VVMVTGASSG IGLEFCINLA KAGCKIIAAA RRVDRLKSLC DQINSKSNGP QRAIAVELDV SADSTTIDSA VQIAWDAFGR IDVLINNAGV
101: RGSVSSSVEI TEEEWNNTYN TNLRGAWMVS KYVCKRMIDA KQGGGSVINI TSMAGLNRTA VPGTIAYGTS KMALDMVTKI MAIELGGENI RVNSISPGVV
201: KSEITEDLVK NKWFHKFLLR TLPLKYLGTT DPALTSLIRY LMHDSSEYVT GNVFIVDAGA TLPGVPIFSS L
101: RGSVSSSVEI TEEEWNNTYN TNLRGAWMVS KYVCKRMIDA KQGGGSVINI TSMAGLNRTA VPGTIAYGTS KMALDMVTKI MAIELGGENI RVNSISPGVV
201: KSEITEDLVK NKWFHKFLLR TLPLKYLGTT DPALTSLIRY LMHDSSEYVT GNVFIVDAGA TLPGVPIFSS L
001: MSNHQTVLKQ LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKLSLDL SEDEWDNVFN TNLKGPWLVA KYVCVLMRDA KRGGSVINIS SVAGVRSIVP GGLAYSCSKG GVDTMSRMMA IELGVHKIRV
201: NSIAPGLFKS EITQALMQKE WLKNVTERTV PLKVQQTIDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL
101: IDALINNAGI RGNVKLSLDL SEDEWDNVFN TNLKGPWLVA KYVCVLMRDA KRGGSVINIS SVAGVRSIVP GGLAYSCSKG GVDTMSRMMA IELGVHKIRV
201: NSIAPGLFKS EITQALMQKE WLKNVTERTV PLKVQQTIDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL
Arabidopsis Description
Beta-ketoacyl-ACP reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q67Z59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.