Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44938 | Canola | cytosol, peroxisome, plastid | 98.93 | 97.54 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 91.43 | 91.43 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 89.64 | 89.01 |
| CDY02920 | Canola | cytosol | 71.07 | 83.97 |
| CDY29203 | Canola | cytosol | 80.0 | 80.58 |
| CDY07814 | Canola | cytosol | 79.64 | 80.22 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 79.29 | 79.29 |
| CDY07809 | Canola | plastid | 41.07 | 77.7 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 78.93 | 77.0 |
| CDY29207 | Canola | plastid | 40.36 | 76.35 |
| CDY40209 | Canola | peroxisome | 79.29 | 71.15 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 76.79 | 68.91 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 55.36 | 67.39 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 63.57 | 65.68 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 62.5 | 64.81 |
| Solyc12g100220.1.1 | Tomato | plastid | 62.14 | 64.21 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 30.71 | 63.7 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 61.43 | 63.24 |
| PGSC0003DMT400088158 | Potato | cytosol | 57.86 | 63.03 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 60.36 | 62.59 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 63.57 | 62.24 |
| KRH71621 | Soybean | cytosol | 61.43 | 60.99 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 62.14 | 60.84 |
| PGSC0003DMT400072205 | Potato | cytosol | 62.86 | 60.69 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 19.64 | 60.44 |
| Solyc12g045030.1.1 | Tomato | nucleus | 58.21 | 60.15 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 57.86 | 59.78 |
| Solyc10g080890.1.1 | Tomato | cytosol | 61.79 | 59.66 |
| KRH71588 | Soybean | cytosol | 60.0 | 59.57 |
| Solyc10g006860.2.1 | Tomato | plastid | 58.21 | 59.06 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 56.79 | 58.67 |
| Solyc10g080900.1.1 | Tomato | plastid | 59.64 | 58.19 |
| PGSC0003DMT400062814 | Potato | cytosol | 20.71 | 58.0 |
| Solyc12g044940.1.1 | Tomato | nucleus | 56.07 | 57.93 |
| Zm00001d031453_P001 | Maize | cytosol | 57.5 | 57.5 |
| Os08t0510400-01 | Rice | plastid | 57.86 | 57.04 |
| EES14264 | Sorghum | cytosol, plastid | 56.79 | 56.99 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 56.79 | 56.18 |
| TraesCS7A01G246900.1 | Wheat | plastid | 56.43 | 55.83 |
| TraesCS2D01G531000.1 | Wheat | plastid | 55.36 | 55.56 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 55.36 | 55.56 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 55.0 | 55.2 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 55.71 | 55.12 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 56.79 | 50.96 |
| Solyc12g036510.1.1 | Tomato | cytosol | 41.07 | 48.73 |
| CDX73391 | Canola | cytosol | 80.0 | 47.76 |
| HORVU2Hr1G116450.1 | Barley | plastid | 53.57 | 47.32 |
| KRH76339 | Soybean | cytosol | 18.21 | 45.13 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 44.64 | 44.17 |
| CDX91138 | Canola | cytosol, plastid | 20.0 | 34.78 |
| CDY02527 | Canola | cytosol | 25.0 | 26.62 |
| CDY65036 | Canola | cytosol | 25.0 | 26.62 |
| CDX69242 | Canola | cytosol, nucleus, plasma membrane, plastid | 12.86 | 14.75 |
Protein Annotations
| EnsemblPlants:CDX73333 | EnsemblPlantsGene:GSBRNA2T00106459001 | Gene3D:3.40.50.720 | GO:A0A078CEF3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR44375 | PANTHER:PTHR44375:SF1 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ProteinID:CDX73333 |
| ProteinID:CDX73333.1 | ScanProsite:PS00061 | SUPFAM:SSF51735 | UniParc:UPI0004EEE99C | MapMan:35.1 | : |
Description
BnaC05g27730D
Coordinates
chrLK031798:-:1761240..1762082
Molecular Weight (calculated)
30399.2 Da
IEP (calculated)
8.263
GRAVY (calculated)
0.176
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKQVLKQL EPWCELKDKV VLLTGASSGI GREVCLDLGK AGCKIIAAAR RVDRLESLCS EINSLSSTGI ILAAPLELDV SSDAATIQKA VKQAWDIFGK
101: IDVLINNAGI RGNVKTCLDL SEDEWDRVFR TNLTGVWLVS KYVCSLMRDA KRGGSVINVS SIAGLNRVMF FGGVAYACSK GGVDTMTRMM AIELGVYNIR
201: VNSIAPGLLQ SEITQGLMQK EWLKNVADRI IPLKVQQTVD PGLTSLVRYL IHDSSRYVSG NIYILDSGTT LPGLPIFSSL
101: IDVLINNAGI RGNVKTCLDL SEDEWDRVFR TNLTGVWLVS KYVCSLMRDA KRGGSVINVS SIAGLNRVMF FGGVAYACSK GGVDTMTRMM AIELGVYNIR
201: VNSIAPGLLQ SEITQGLMQK EWLKNVADRI IPLKVQQTVD PGLTSLVRYL IHDSSRYVSG NIYILDSGTT LPGLPIFSSL
001: MIVCFFCGQK QVLKQLEPWC ELKDKVVLVT GASSGIGREI CLDLCKAGCK IVAAARRVDR LNSLCSEINS FGAIGVQAVA LELDVSSEAD TIRKAVKEAW
101: ETFGKIDVLI NNAGIRGNVK SSLDLSEEEW DKVFRTNLTG SWLISKYVCL LMRDAERGGS VINVSSISGL HRGLLRGGLA YACSKGGVDT MTRMMAIELA
201: VYKIRVNSIA PGIFRSEITQ GLFQKEWLKK VTEKVVPLKM QQTVDPGLTS LVRYLIHDSS QYVTGNTYIV DSGTTLPGVP IFSSLSP
101: ETFGKIDVLI NNAGIRGNVK SSLDLSEEEW DKVFRTNLTG SWLISKYVCL LMRDAERGGS VINVSSISGL HRGLLRGGLA YACSKGGVDT MTRMMAIELA
201: VYKIRVNSIA PGIFRSEITQ GLFQKEWLKK VTEKVVPLKM QQTVDPGLTS LVRYLIHDSS QYVTGNTYIV DSGTTLPGVP IFSSLSP
Arabidopsis Description
F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.