CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030964.1-P	Field mustard	cytosol	98.1	98.1
CDY02527	Canola	cytosol	97.34	97.34
AT3G01980.3	Thale cress	cytosol	79.09	70.27
VIT_14s0068g01760.t01	Wine grape	cytosol	60.08	59.4
KRH03600	Soybean	cytosol	59.7	58.58
Solyc07g047800.2.1	Tomato	cytosol, nucleus, plastid	58.17	57.52
PGSC0003DMT400015737	Potato	cytosol	57.03	56.39
EER90514	Sorghum	cytosol	56.27	55.43
GSMUA_Achr4P16020_001	Banana	cytosol	55.51	54.89
Zm00001d012849_P001	Maize	cytosol	55.51	54.28
Os03t0850000-01	Rice	cytosol	53.23	50.54
GSMUA_Achr8P17860_001	Banana	cytosol	33.84	50.0
TraesCS4A01G339500.1	Wheat	cytosol	51.71	49.63
GSMUA_Achr8P17880_001	Banana	cytosol	19.39	48.57
TraesCS5B01G549100.1	Wheat	cytosol, peroxisome, plastid	49.81	47.81
TraesCS5D01G536000.3	Wheat	endoplasmic reticulum, peroxisome, plastid	50.95	45.12
HORVU7Hr1G092130.2	Barley	cytosol, nucleus, plastid	38.78	38.2
HORVU3Hr1G097170.1	Barley	plastid	37.64	36.67
CDY03343	Canola	cytosol, nucleus, peroxisome	28.52	26.79
CDY29203	Canola	cytosol	28.14	26.62
CDY07809	Canola	plastid	14.83	26.35
CDY29207	Canola	plastid	14.83	26.35
CDY07814	Canola	cytosol	27.76	26.26
CDY48725	Canola	cytosol, peroxisome, plastid	28.52	26.13
CDX76107	Canola	cytosol, nucleus, peroxisome	27.0	25.36
CDY65313	Canola	cytosol, nucleus, peroxisome	27.0	25.18
CDX73333	Canola	cytosol, nucleus, peroxisome	26.62	25.0
CDY44938	Canola	cytosol, peroxisome, plastid	26.62	24.65
CDY40209	Canola	peroxisome	27.0	22.76
CDY02920	Canola	cytosol	19.77	21.94
CDX73391	Canola	cytosol	27.0	15.14
CDX69242	Canola	cytosol, nucleus, plasma membrane, plastid	11.79	12.7
CDX91138	Canola	cytosol, plastid	6.08	9.94

Protein Annotations

EnsemblPlants:CDY65036	EnsemblPlantsGene:GSBRNA2T00044063001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375
PANTHER:PTHR44375:SF2	PFAM:PF13561	PRINTS:PR00081	ProteinID:CDY65036	ProteinID:CDY65036.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EE062D	UniProt:A0A078JH57	MapMan:35.2	:	:

Description

BnaC03g78090DBnaC03g78090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH57]

Coordinates

chrLK034635:-:12595..13838

Molecular Weight (calculated)

28656.8 Da

IEP (calculated)

8.050

GRAVY (calculated)

0.057

Length

263 amino acids

Sequence
(BLAST)

001: MAKKVLMTAN GDEVSRNIAI ELAKHGCRLV LMGNEASLRS TVDYIRVSVD GAFPVELIGA DMEADSEEAF YVAVQKAWTR LGSLDAFVNC CTYQGKMQDI
101: LRVSEDEFKK ITKINLTATW FILKAVASMM KENGTGGSIV FLATIASGER GLYPGADAYA TAAAAIHQLV RASAMSLGKH KIRVNMISRG LHLGDEYPVS
201: VGIDRAQKLV KDAAPLGQWL NPETDIYSTV IYLISDGSRF MTGTTVMVDG AQSLMRPRLK SYM

Best Arabidopsis Sequence Match ( AT3G01980.4 )
(BLAST)

001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM

Arabidopsis Description

F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.