Factsheet for Solyc07g047800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015737	Potato	cytosol	96.24	96.24
VIT_14s0068g01760.t01	Wine grape	cytosol	74.81	74.81
KRH03600	Soybean	cytosol	67.29	66.79
GSMUA_Achr4P16020_001	Banana	cytosol	65.79	65.79
GSMUA_Achr8P17880_001	Banana	cytosol	23.68	60.0
Bra030964.1-P	Field mustard	cytosol	57.52	58.17
CDY65036	Canola	cytosol	57.52	58.17
GSMUA_Achr8P17860_001	Banana	cytosol	38.72	57.87
CDY02527	Canola	cytosol	56.77	57.41
EER90514	Sorghum	cytosol	57.52	57.3
Zm00001d012849_P001	Maize	cytosol	56.77	56.13
Os03t0850000-01	Rice	cytosol	57.52	55.23
TraesCS4A01G339500.1	Wheat	cytosol	53.76	52.19
AT3G01980.3	Thale cress	cytosol	57.89	52.03
TraesCS5B01G549100.1	Wheat	cytosol, peroxisome, plastid	53.01	51.46
TraesCS5D01G536000.3	Wheat	endoplasmic reticulum, peroxisome, plastid	52.26	46.8
HORVU3Hr1G097170.1	Barley	plastid	40.6	40.0
HORVU7Hr1G092130.2	Barley	cytosol, nucleus, plastid	39.47	39.33
Solyc12g100220.1.1	Tomato	plastid	30.08	29.52
Solyc12g100280.1.1	Tomato	cytosol	13.53	27.91
Solyc12g045030.1.1	Tomato	nucleus	28.2	27.68
Solyc10g080900.1.1	Tomato	plastid	29.7	27.53
Solyc12g044940.1.1	Tomato	nucleus	27.82	27.31
Solyc10g080890.1.1	Tomato	cytosol	28.95	26.55
Solyc10g078360.1.1	Tomato	cytosol	28.57	26.12
Solyc10g006860.2.1	Tomato	plastid	27.07	26.09
Solyc12g036510.1.1	Tomato	cytosol	20.68	23.31

Protein Annotations

EnsemblPlants:Solyc07g047800.2.1	EnsemblPlantsGene:Solyc07g047800.2	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375
PFAM:PF13561	PRINTS:PR00081	SUPFAM:SSF51735	UniParc:UPI000276AE44	UniProt:K4CEY6	MapMan:35.2

Description

No Description!

Coordinates

chr7:-:59011186..59016715

Molecular Weight (calculated)

29551.0 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.148

Length

266 amino acids

Sequence
(BLAST)

001: MENPGKKVLL TSNGDEICNN IAYHLAQRGC QLVLMGNERQ LKSVAENIKQ SLKGSVAVEV VGLDMTEDRE TAFDEAVDKA WKIFGKLDAL VHCYAYEGKM
101: QDPLQLIDDE FKKIVKINFM AGWYLLKCIG NRMRDGKSGG SIVFMTSIIG AERGIYQGAA AYGSCAAGIQ QLVRLSAIEL GKYQIRVNGI LRGLHLEDEF
201: PLSVGKERAV KLTKEAAPLN RWLDPKKDLA STVIYLISDD SRYMTGTSIF VDGAQSLVRP RMRSYM

Best Arabidopsis Sequence Match ( AT3G01980.4 )
(BLAST)

001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM

Arabidopsis Description

F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.