Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc12g055780.1.1 | |
| Solyc12g055790.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | Solyc12g055780.1.1 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | Solyc12g055790.1.1 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072205 | Potato | cytosol | 94.83 | 94.83 |
| Solyc10g080900.1.1 | Tomato | plastid | 83.79 | 84.67 |
| Solyc12g100220.1.1 | Tomato | plastid | 63.45 | 67.9 |
| Solyc12g044940.1.1 | Tomato | nucleus | 62.41 | 66.79 |
| Solyc12g045030.1.1 | Tomato | nucleus | 62.07 | 66.42 |
| Bra024488.1-P | Field mustard | plastid | 33.79 | 66.22 |
| CDY29207 | Canola | plastid | 33.79 | 66.22 |
| AT3G55310.1 | Thale cress | cytosol | 62.76 | 65.23 |
| Solyc10g006860.2.1 | Tomato | plastid | 62.07 | 65.22 |
| CDY07809 | Canola | plastid | 33.1 | 64.86 |
| CDY29203 | Canola | cytosol | 61.72 | 64.39 |
| Bra040871.1-P | Field mustard | cytosol | 61.72 | 64.39 |
| Bra002097.1-P | Field mustard | cytosol | 61.38 | 64.03 |
| Zm00001d031453_P001 | Maize | cytosol | 61.72 | 63.93 |
| AT3G55290.1 | Thale cress | cytosol | 61.72 | 63.93 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 61.38 | 63.57 |
| CDY07814 | Canola | cytosol | 60.69 | 63.31 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 62.41 | 62.85 |
| Solyc12g100280.1.1 | Tomato | cytosol | 27.93 | 62.79 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 62.07 | 62.72 |
| Os08t0510400-01 | Rice | plastid | 61.38 | 62.68 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 60.69 | 62.41 |
| Bra036706.1-P | Field mustard | cytosol | 61.72 | 62.37 |
| Bra014762.1-P | Field mustard | cytosol | 60.0 | 62.14 |
| AT1G63380.2 | Thale cress | cytosol | 61.38 | 62.02 |
| EES14264 | Sorghum | cytosol, plastid | 59.66 | 62.01 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 60.34 | 61.84 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 59.66 | 61.79 |
| TraesCS7A01G246900.1 | Wheat | plastid | 60.0 | 61.48 |
| Bra014757.1-P | Field mustard | cytosol | 59.31 | 61.43 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 58.97 | 61.07 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 59.66 | 60.92 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 59.31 | 60.78 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 58.28 | 60.57 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 58.62 | 60.28 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 57.93 | 60.22 |
| TraesCS2D01G531000.1 | Wheat | plastid | 57.24 | 59.5 |
| Solyc10g078360.1.1 | Tomato | cytosol | 59.66 | 59.45 |
| Bra014761.1-P | Field mustard | cytosol | 51.03 | 58.27 |
| GSMUA_Achr3P03770_001 | Banana | cytosol | 11.38 | 57.89 |
| CDY02920 | Canola | cytosol | 46.9 | 57.38 |
| CDY40209 | Canola | peroxisome | 61.38 | 57.05 |
| Bra014760.1-P | Field mustard | plastid | 45.17 | 56.96 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 60.69 | 56.41 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 58.28 | 54.17 |
| HORVU2Hr1G116450.1 | Barley | plastid | 56.9 | 52.05 |
| Solyc12g036510.1.1 | Tomato | cytosol | 41.72 | 51.27 |
| Bra007151.1-P | Field mustard | cytosol | 61.72 | 39.96 |
| CDX73391 | Canola | cytosol | 62.41 | 38.59 |
| CDX91138 | Canola | cytosol, plastid | 17.59 | 31.68 |
| Solyc07g047800.2.1 | Tomato | cytosol, nucleus, plastid | 26.55 | 28.95 |
Protein Annotations
| EnsemblPlants:Solyc10g080890.1.1 | EnsemblPlantsGene:Solyc10g080890.1 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR44375 | PANTHER:PTHR44375:SF2 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 |
| SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0002769615 | UniProt:K4D2X6 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr10:+:62066940..62069395
Molecular Weight (calculated)
31254.4 Da
IEP (calculated)
7.971
GRAVY (calculated)
-0.012
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHAEVRRQ LEPWGELAGK VVMVTGASSG IGREICVDLS KAGCRIIAAA RRIDRLNSLC DEINGISSNS SNESTISSQE IQAVAIELDV SANDAAIEAA
101: VQKAWNAFGR IDVLVNNAGI RGSVHSPLNL SEEEWEKIYN TNLRGAWLVT KYVCIHMRAA NQGGSVINIS STAGLNRGKL PGSLAYASSK EALNSITKLM
201: AIELGPYKIR VNSVSPGVFK SEITERLIQK DWFKTVALKT IPLRTHGTSN PALTSMVRYL IHDSSEYVSG NIFIVDAGAT LPGVPIFSSL
101: VQKAWNAFGR IDVLVNNAGI RGSVHSPLNL SEEEWEKIYN TNLRGAWLVT KYVCIHMRAA NQGGSVINIS STAGLNRGKL PGSLAYASSK EALNSITKLM
201: AIELGPYKIR VNSVSPGVFK SEITERLIQK DWFKTVALKT IPLRTHGTSN PALTSMVRYL IHDSSEYVSG NIFIVDAGAT LPGVPIFSSL
001: MSNHQTVLKQ LEPWCELKDK VVLVTGASSG IGREICLDLC KAGCKIVAAA RRVDRLNSLC SEINSFGAIG VQAVALELDV SSEADTIRKA VKEAWETFGK
101: IDVLINNAGI RGNVKSSLDL SEEEWDKVFR TNLTGSWLIS KYVCLLMRDA ERGGSVINVS SISGLHRGLL RGGLAYACSK GGVDTMTRMM AIELAVYKIR
201: VNSIAPGIFR SEITQGLFQK EWLKKVTEKV VPLKMQQTVD PGLTSLVRYL IHDSSQYVTG NTYIVDSGTT LPGVPIFSSL SP
101: IDVLINNAGI RGNVKSSLDL SEEEWDKVFR TNLTGSWLIS KYVCLLMRDA ERGGSVINVS SISGLHRGLL RGGLAYACSK GGVDTMTRMM AIELAVYKIR
201: VNSIAPGIFR SEITQGLFQK EWLKKVTEKV VPLKMQQTVD PGLTSLVRYL IHDSSQYVTG NTYIVDSGTT LPGVPIFSSL SP
Arabidopsis Description
F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.