Factsheet for PGSC0003DMT400072205

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080890.1.1	Tomato	cytosol	94.83	94.83
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	66.55	71.48
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	66.21	71.11
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	65.52	70.11
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	55.52	70.0
PGSC0003DMT400088158	Potato	cytosol	61.03	68.87
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	64.48	68.75
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	26.21	68.47
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	63.79	68.27
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	31.72	68.15
CDY29207	Canola	plastid	34.48	67.57
Bra024488.1-P	Field mustard	plastid	34.48	67.57
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	63.1	67.53
CDY07809	Canola	plastid	33.79	66.22
KRH71621	Soybean	cytosol	64.14	65.96
KRH71588	Soybean	cytosol	64.14	65.96
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	20.69	65.93
Bra040871.1-P	Field mustard	cytosol	62.76	65.47
CDY29203	Canola	cytosol	62.76	65.47
Zm00001d031453_P001	Maize	cytosol	63.1	65.36
AT3G55310.1	Thale cress	cytosol	62.41	64.87
CDY07814	Canola	cytosol	61.72	64.39
Bra002097.1-P	Field mustard	cytosol	61.38	64.03
EES14264	Sorghum	cytosol, plastid	61.38	63.8
PGSC0003DMT400018472	Potato	cytosol	60.69	63.77
AT3G55290.1	Thale cress	cytosol	61.38	63.57
Os08t0510400-01	Rice	plastid	62.07	63.38
TraesCS7D01G245700.1	Wheat	cytosol	61.72	63.25
CDY03343	Canola	cytosol, nucleus, peroxisome	61.03	63.21
PGSC0003DMT400062814	Potato	cytosol	21.72	63.0
TraesCS7A01G246900.1	Wheat	plastid	61.38	62.9
Bra014757.1-P	Field mustard	cytosol	60.69	62.86
Bra014762.1-P	Field mustard	cytosol	60.69	62.86
CDX73333	Canola	cytosol, nucleus, peroxisome	60.69	62.86
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	62.07	62.5
CDX76107	Canola	cytosol, nucleus, peroxisome	60.34	62.5
CDY48725	Canola	cytosol, peroxisome, plastid	61.72	62.37
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	60.34	62.06
Bra036706.1-P	Field mustard	cytosol	61.38	62.02
CDY44938	Canola	cytosol, peroxisome, plastid	60.69	61.97
TraesCS7B01G144400.1	Wheat	cytosol	60.34	61.84
CDY65313	Canola	cytosol, nucleus, peroxisome	60.0	61.7
AT1G63380.2	Thale cress	cytosol	61.03	61.67
TraesCS7A01G427800.1	Wheat	mitochondrion	59.31	61.65
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	58.97	61.29
TraesCS2D01G531000.1	Wheat	plastid	58.62	60.93
Bra014761.1-P	Field mustard	cytosol	52.41	59.84
CDY40209	Canola	peroxisome	62.41	58.01
GSMUA_Achr3P03770_001	Banana	cytosol	11.38	57.89
Bra014760.1-P	Field mustard	plastid	45.86	57.83
CDY02920	Canola	cytosol	47.24	57.81
HORVU7Hr1G050760.2	Barley	vacuole	61.38	57.05
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	23.79	55.65
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	58.28	54.17
PGSC0003DMT400021571	Potato	cytosol	32.41	54.02
HORVU2Hr1G116450.1	Barley	plastid	57.59	52.68
KRH76339	Soybean	cytosol	19.31	49.56
Bra007151.1-P	Field mustard	cytosol	62.76	40.62
CDX73391	Canola	cytosol	63.1	39.02
CDX91138	Canola	cytosol, plastid	16.9	30.43
PGSC0003DMT400015737	Potato	cytosol	26.55	28.95

Protein Annotations

EntrezGene:102587758	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:AAN32641	ProteinID:AAN32641.1	EMBL:AF416732
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
UniProt:M1CPU6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400028097	PGSC:PGSC0003DMG400028097	EnsemblPlants:PGSC0003DMT400072205
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375	PANTHER:PTHR44375:SF2	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00029666B9	RefSeq:XP_006339259.1	SEG:seg	:

Description

Short-chain type alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400028097]

Coordinates

chr10:-:57048257..57051061

Molecular Weight (calculated)

31149.4 Da

IEP (calculated)

8.610

GRAVY (calculated)

0.034

Length

290 amino acids

Sequence
(BLAST)

001: MENHAEVGRQ LEPWGELAGK VVLITGASSG IGREFCLDLS KAGCRIIAAA RRIDRLKSLC DEINGISSNS SIESTISSQE LRAVAIELDV SANGAAIEAA
101: VQKAWNAFGR IDVLVNNAGI RGSVHSPLNL SEEEWEKIYN TNLRGAWLVT KYVCIHMRAA NQGGSVINIS STAGLNRGKL PGSLAYASSK DALNSITKVM
201: AIELGPYKIR VNSISPGVFK SEITERLIQK DWFKNVALKT IPLRTHGTSN PALTSVVRYL IHDSSEYVSG NIFIVDAGAT LPGVPIFSSL

Best Arabidopsis Sequence Match ( AT3G55310.1 )
(BLAST)

001: MSNHQTVLKQ LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKLSLDL SEDEWDNVFN TNLKGPWLVA KYVCVLMRDA KRGGSVINIS SVAGVRSIVP GGLAYSCSKG GVDTMSRMMA IELGVHKIRV
201: NSIAPGLFKS EITQALMQKE WLKNVTERTV PLKVQQTIDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL

Arabidopsis Description

Beta-ketoacyl-ACP reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q67Z59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.