Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014757.1-P | Field mustard | cytosol | 95.67 | 86.79 |
| Bra014760.1-P | Field mustard | plastid | 76.38 | 84.35 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 90.94 | 81.91 |
| Bra014762.1-P | Field mustard | cytosol | 87.8 | 79.64 |
| Bra040871.1-P | Field mustard | cytosol | 78.35 | 71.58 |
| Bra002097.1-P | Field mustard | cytosol | 75.2 | 68.7 |
| Bra036706.1-P | Field mustard | cytosol | 76.77 | 67.94 |
| Bra024488.1-P | Field mustard | plastid | 36.61 | 62.84 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 77.17 | 62.82 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 61.81 | 57.93 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 52.36 | 57.83 |
| Solyc12g100220.1.1 | Tomato | plastid | 61.02 | 57.2 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 61.02 | 56.99 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 59.45 | 55.93 |
| PGSC0003DMT400088158 | Potato | cytosol | 56.3 | 55.64 |
| KRH71621 | Soybean | cytosol | 60.63 | 54.61 |
| Solyc12g045030.1.1 | Tomato | nucleus | 57.48 | 53.87 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 57.48 | 53.87 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 60.63 | 53.85 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 57.09 | 53.7 |
| KRH71588 | Soybean | cytosol | 59.45 | 53.55 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 60.24 | 53.5 |
| PGSC0003DMT400072205 | Potato | cytosol | 59.84 | 52.41 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 55.91 | 52.4 |
| Solyc12g044940.1.1 | Tomato | nucleus | 55.51 | 52.03 |
| Solyc10g006860.2.1 | Tomato | plastid | 55.91 | 51.45 |
| Solyc10g080890.1.1 | Tomato | cytosol | 58.27 | 51.03 |
| Solyc10g080900.1.1 | Tomato | plastid | 57.09 | 50.52 |
| Os08t0510400-01 | Rice | plastid | 55.91 | 50.0 |
| EES14264 | Sorghum | cytosol, plastid | 54.33 | 49.46 |
| Zm00001d031453_P001 | Maize | cytosol | 54.33 | 49.29 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 53.94 | 49.1 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 54.33 | 48.76 |
| TraesCS7A01G246900.1 | Wheat | plastid | 53.94 | 48.41 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 53.15 | 48.39 |
| TraesCS2D01G531000.1 | Wheat | plastid | 52.76 | 48.03 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 53.15 | 47.7 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 24.8 | 46.67 |
| Solyc12g036510.1.1 | Tomato | cytosol | 43.31 | 46.61 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 54.33 | 44.23 |
| Bra007151.1-P | Field mustard | cytosol | 76.77 | 43.53 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 14.96 | 41.76 |
| HORVU2Hr1G116450.1 | Barley | plastid | 51.57 | 41.32 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 44.88 | 40.28 |
| PGSC0003DMT400062814 | Potato | cytosol | 15.35 | 39.0 |
| KRH76339 | Soybean | cytosol | 16.14 | 36.28 |
| Bra030964.1-P | Field mustard | cytosol | 26.38 | 25.48 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EnsemblPlantsGene:Bra014761 | EnsemblPlants:Bra014761.1 | EnsemblPlants:Bra014761.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | UniProt:M4DE42 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR44375 |
| PANTHER:PTHR44375:SF1 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0002544B2A | SEG:seg |
Description
AT3G55290 (E=1e-109) | short-chain dehydrogenase/reductase (SDR) family protein
Coordinates
chrA04:-:2869094..2869858
Molecular Weight (calculated)
27557.6 Da
IEP (calculated)
8.587
GRAVY (calculated)
0.033
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKQMLKQL EPWCELKDKV VLLTGASSGI GREVCLDLGK AGCKIIAAAR RVDRLESLCS EINSLSSTGI QLAAPIELDV SSDAATIQKA VKQAWDIFGK
101: IDVLINNAGI RGNVKTSLDL TEDEWNTVFR TNLTGPWLVS KYVCSLMRDS KRGGSVINVS SISGLHRGLF FGGVAYACSK GGVDTMTRMM AIELGVYNIR
201: VNSIAPGLLK SEITQGLMQK EWLKNVADRI IPLKVQQTGD PGITSLARYL IHDS
101: IDVLINNAGI RGNVKTSLDL TEDEWNTVFR TNLTGPWLVS KYVCSLMRDS KRGGSVINVS SISGLHRGLF FGGVAYACSK GGVDTMTRMM AIELGVYNIR
201: VNSIAPGLLK SEITQGLMQK EWLKNVADRI IPLKVQQTGD PGITSLARYL IHDS
001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AAALELDVSS DADTIRKAVK EAWEIFGTID
101: VLINNAGIRG NVKSSLDLSK EEWDKVFRTN LTGSWLISKY VCLLMRDAKR GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LEKVTEKIVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGATLP GVPIFSSL
101: VLINNAGIRG NVKSSLDLSK EEWDKVFRTN LTGSWLISKY VCLLMRDAKR GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LEKVTEKIVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGATLP GVPIFSSL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.