Factsheet for VIT_08s0040g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0054g00450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	VIT_09s0054g00450.t01	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01200.t01	Wine grape	cytosol	92.66	92.66
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	27.62	71.17
KRH71621	Soybean	cytosol	69.23	70.21
PGSC0003DMT400018472	Potato	cytosol	67.13	69.57
CDY07809	Canola	plastid	35.31	68.24
Solyc10g078360.1.1	Tomato	cytosol	68.18	67.01
CDY29207	Canola	plastid	34.27	66.22
Bra024488.1-P	Field mustard	plastid	34.27	66.22
AT3G55290.1	Thale cress	cytosol	64.34	65.71
KRH71588	Soybean	cytosol	64.34	65.25
CDY29203	Canola	cytosol	62.94	64.75
Bra040871.1-P	Field mustard	cytosol	62.94	64.75
Zm00001d031453_P001	Maize	cytosol	63.29	64.64
Bra014762.1-P	Field mustard	cytosol	62.59	63.93
EES14264	Sorghum	cytosol, plastid	62.24	63.8
Os08t0510400-01	Rice	plastid	63.29	63.73
Bra002097.1-P	Field mustard	cytosol	61.89	63.67
CDY07814	Canola	cytosol	61.89	63.67
CDX73333	Canola	cytosol, nucleus, peroxisome	62.24	63.57
CDX76107	Canola	cytosol, nucleus, peroxisome	61.89	63.21
Bra014757.1-P	Field mustard	cytosol	61.89	63.21
GSMUA_Achr3P03770_001	Banana	cytosol	12.59	63.16
CDY65313	Canola	cytosol, nucleus, peroxisome	62.24	63.12
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	63.29	62.85
AT3G55310.1	Thale cress	cytosol	61.19	62.72
CDY48725	Canola	cytosol, peroxisome, plastid	62.94	62.72
CDY44938	Canola	cytosol, peroxisome, plastid	62.24	62.68
TraesCS7D01G245700.1	Wheat	cytosol	61.89	62.54
CDY03343	Canola	cytosol, nucleus, peroxisome	61.19	62.5
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	61.54	62.41
PGSC0003DMT400021571	Potato	cytosol	37.76	62.07
TraesCS7A01G246900.1	Wheat	plastid	61.19	61.84
Bra036706.1-P	Field mustard	cytosol	61.89	61.67
TraesCS7B01G144400.1	Wheat	cytosol	60.49	61.13
AT1G63380.2	Thale cress	cytosol	61.19	60.98
Bra014761.1-P	Field mustard	cytosol	53.85	60.63
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	26.22	60.48
TraesCS7A01G427800.1	Wheat	mitochondrion	58.74	60.22
TraesCS2D01G531000.1	Wheat	plastid	58.74	60.22
Bra014760.1-P	Field mustard	plastid	48.25	60.0
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	58.04	59.5
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	63.29	58.01
CDY02920	Canola	cytosol	46.5	56.12
CDY40209	Canola	peroxisome	61.19	56.09
HORVU7Hr1G050760.2	Barley	vacuole	61.19	56.09
VIT_08s0040g01210.t01	Wine grape	cytosol	51.75	52.3
HORVU2Hr1G116450.1	Barley	plastid	56.99	51.42
KRH76339	Soybean	cytosol	19.23	48.67
Bra007151.1-P	Field mustard	cytosol	61.54	39.29
CDX73391	Canola	cytosol	62.24	37.95
CDX91138	Canola	cytosol, plastid	16.78	29.81
VIT_14s0068g01760.t01	Wine grape	cytosol	27.62	29.7

Protein Annotations

EntrezGene:100248318	Gene3D:3.40.50.720	MapMan:35.1	EMBL:AM433556	ProteinID:CAN64848	ProteinID:CAN64848.1
ProteinID:CCB57113	ProteinID:CCB57113.1	UniProt:F6HR64	EMBL:FN596008	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375	PANTHER:PTHR44375:SF2	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TIGR:TC58004	UniParc:UPI00015CAF8C	ArrayExpress:VIT_08s0040g01190	EnsemblPlantsGene:VIT_08s0040g01190
EnsemblPlants:VIT_08s0040g01190.t01	unigene:Vvi.7378	RefSeq:XP_010653621.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:12194202..12204744

Molecular Weight (calculated)

30381.5 Da

IEP (calculated)

8.316

GRAVY (calculated)

0.023

Length

286 amino acids

Sequence
(BLAST)

001: MASQVANHLE PWQDLEGKVV MVTGASSGLG SEFCLNLAKA GCKIVAAARR VDRLKSLCDE INNLTHSNLP PNADPPLRAV AVELDVTSDG SSIGASVQKA
101: WEAFGRIDAL LNNAGIRGNV NSPLDISEEE WNNTLKTNLT GSWLVSKYVG MRMRDAKNGG SIINISSIAA LNRGQLPGGV AYVSSKSGLS AMTKVMALEL
201: GAYNIRANAI APGLFKSEIT SGLMQKDWLN TVAQRTCPMR TFGTSDPALT SLVRYLIHDS SRYISGNIFI VDAGATLPGV PIFSSL

Best Arabidopsis Sequence Match ( AT3G55290.1 )
(BLAST)

001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.