Factsheet for VIT_14s0068g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047800.2.1	Tomato	cytosol, nucleus, plastid	74.81	74.81
PGSC0003DMT400015737	Potato	cytosol	73.68	73.68
KRH03600	Soybean	cytosol	71.8	71.27
GSMUA_Achr4P16020_001	Banana	cytosol	70.68	70.68
GSMUA_Achr8P17880_001	Banana	cytosol	25.19	63.81
CDY65036	Canola	cytosol	59.4	60.08
Bra030964.1-P	Field mustard	cytosol	59.02	59.7
CDY02527	Canola	cytosol	58.27	58.94
GSMUA_Achr8P17860_001	Banana	cytosol	38.72	57.87
EER90514	Sorghum	cytosol	57.52	57.3
Zm00001d012849_P001	Maize	cytosol	56.39	55.76
Os03t0850000-01	Rice	cytosol	56.77	54.51
AT3G01980.3	Thale cress	cytosol	57.89	52.03
TraesCS4A01G339500.1	Wheat	cytosol	53.38	51.82
TraesCS5B01G549100.1	Wheat	cytosol, peroxisome, plastid	51.5	50.0
TraesCS5D01G536000.3	Wheat	endoplasmic reticulum, peroxisome, plastid	52.63	47.14
HORVU7Hr1G092130.2	Barley	cytosol, nucleus, plastid	37.22	37.08
HORVU3Hr1G097170.1	Barley	plastid	37.22	36.67
VIT_08s0040g01200.t01	Wine grape	cytosol	30.83	28.67
VIT_08s0040g01190.t01	Wine grape	cytosol	29.7	27.62
VIT_08s0040g01210.t01	Wine grape	cytosol	21.8	20.49

Protein Annotations

ArrayExpress:VIT_14s0068g01760	EMBL:FN595232	EnsemblPlants:VIT_14s0068g01760.t01	EnsemblPlantsGene:VIT_14s0068g01760	EntrezGene:100258305	EntrezGene:LOC100258305
Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375	PFAM:PF13561	PRINTS:PR00081
ProteinID:CBI21328	ProteinID:CBI21328.3	RefSeq:XP_002271350	RefSeq:XP_002271350.1	SUPFAM:SSF51735	TIGR:TC59575
UniParc:UPI00015C84C0	UniProt:D7SVM9	wikigene:100258305	wikigene:LOC100258305	MapMan:35.2	:

Description

No Description!

Coordinates

chr14:+:25458980..25462230

Molecular Weight (calculated)

29391.8 Da

IEP (calculated)

8.431

GRAVY (calculated)

-0.124

Length

266 amino acids

Sequence
(BLAST)

001: MENQGKKVLV TSNGDEISAN IAFHLAKRGC RLVLMGNESA LRKIAEEIMG SIKGAAPVEV VGMDMEEEKE SVFDEAVGRA TMWLGKLDAL VHCYSYEGKM
101: QEPLNLPEDE FKKIVKINFM SSWYLLKAVG KRLKEQKSGG SIVFLSSIIG SERGLYQGAA AYGSCLAGVQ QLVRHAALEI GKYQIRVNAI ARGLHLDDEF
201: PLSVGKERAE KLVKDAAPLH RWLDVKNDLA STVIYLVSDG SRYMTGTTIF VDGAQSLVRP RMRSYM

Best Arabidopsis Sequence Match ( AT3G01980.4 )
(BLAST)

001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM

Arabidopsis Description

F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.