Factsheet for Bra030964.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02527	Canola	cytosol	98.48	98.48
CDY65036	Canola	cytosol	98.1	98.1
AT3G01980.3	Thale cress	cytosol	79.09	70.27
VIT_14s0068g01760.t01	Wine grape	cytosol	59.7	59.02
KRH03600	Soybean	cytosol	59.7	58.58
Solyc07g047800.2.1	Tomato	cytosol, nucleus, plastid	58.17	57.52
PGSC0003DMT400015737	Potato	cytosol	57.03	56.39
EER90514	Sorghum	cytosol	56.65	55.81
GSMUA_Achr4P16020_001	Banana	cytosol	55.51	54.89
Zm00001d012849_P001	Maize	cytosol	55.89	54.65
Os03t0850000-01	Rice	cytosol	53.61	50.9
GSMUA_Achr8P17860_001	Banana	cytosol	34.22	50.56
TraesCS4A01G339500.1	Wheat	cytosol	52.09	50.0
TraesCS5B01G549100.1	Wheat	cytosol, peroxisome, plastid	50.19	48.18
GSMUA_Achr8P17880_001	Banana	cytosol	19.01	47.62
TraesCS5D01G536000.3	Wheat	endoplasmic reticulum, peroxisome, plastid	51.33	45.45
HORVU7Hr1G092130.2	Barley	cytosol, nucleus, plastid	39.54	38.95
HORVU3Hr1G097170.1	Barley	plastid	38.78	37.78
Bra014760.1-P	Field mustard	plastid	23.57	26.96
Bra040871.1-P	Field mustard	cytosol	28.14	26.62
Bra014761.1-P	Field mustard	cytosol	25.48	26.38
Bra024488.1-P	Field mustard	plastid	14.83	26.35
Bra036706.1-P	Field mustard	cytosol	28.52	26.13
Bra014757.1-P	Field mustard	cytosol	27.38	25.71
Bra002097.1-P	Field mustard	cytosol	26.62	25.18
Bra014762.1-P	Field mustard	cytosol	26.24	24.64
Bra007151.1-P	Field mustard	cytosol	27.0	15.85

Protein Annotations

EnsemblPlants:Bra030964.1	EnsemblPlants:Bra030964.1-P	EnsemblPlantsGene:Bra030964	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375
PANTHER:PTHR44375:SF2	PFAM:PF13561	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002545813
UniProt:M4EQ93	MapMan:35.2	:	:	:	:

Description

AT3G01980 (E=7e-113) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA08:+:1161511..1162624

Molecular Weight (calculated)

28595.8 Da

IEP (calculated)

8.297

GRAVY (calculated)

0.058

Length

263 amino acids

Sequence
(BLAST)

001: MAKKVLMTAN GDEVSRNIAI QLAKHGCRLV LMGNEASLRS TVDYIRVSVD GAFPVELIGA DMEADSEEAF YVAVQKAWTR LGSLDAFVNC CTYQGKMQDI
101: LRVSEDEFKK ITKINLTAPW FILKAVASMM KENGTGGSIV FLATIASGER GLYPGADAYA TAAAAIHQLV RASAMSLGKH KIRVNMISRG LHLGDEYPVS
201: VGIDRAQKLV KDAAPLGQWL NPEKDIYSTV IYLISDGSCF MTGTTVMVDG AQSLTRPRLK SYM

Best Arabidopsis Sequence Match ( AT3G01980.4 )
(BLAST)

001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM

Arabidopsis Description

F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.