Factsheet for Bra040871.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29203	Canola	cytosol	100.0	100.0
Bra002097.1-P	Field mustard	cytosol	82.73	82.73
Bra014757.1-P	Field mustard	cytosol	80.94	80.36
Bra014762.1-P	Field mustard	cytosol	79.14	78.57
Bra014761.1-P	Field mustard	cytosol	71.58	78.35
Bra014760.1-P	Field mustard	plastid	64.75	78.26
Bra024488.1-P	Field mustard	plastid	41.01	77.03
Bra036706.1-P	Field mustard	cytosol	78.42	75.96
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	80.58	71.79
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	65.47	67.16
PGSC0003DMT400088158	Potato	cytosol	60.07	64.98
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	53.6	64.78
Solyc12g100220.1.1	Tomato	plastid	62.95	64.58
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	62.59	64.44
VIT_08s0040g01190.t01	Wine grape	cytosol	64.75	62.94
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	61.51	62.87
PGSC0003DMT400072205	Potato	cytosol	65.47	62.76
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	60.79	62.59
Solyc12g045030.1.1	Tomato	nucleus	60.79	62.36
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	30.22	62.22
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	60.43	61.99
Solyc12g044940.1.1	Tomato	nucleus	60.43	61.99
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	60.43	61.99
Solyc10g080890.1.1	Tomato	cytosol	64.39	61.72
VIT_08s0040g01200.t01	Wine grape	cytosol	63.31	61.54
KRH71621	Soybean	cytosol	61.15	60.28
Solyc10g080900.1.1	Tomato	plastid	61.87	59.93
Solyc10g006860.2.1	Tomato	plastid	59.35	59.78
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	19.42	59.34
KRH71588	Soybean	cytosol	60.07	59.22
Os08t0510400-01	Rice	plastid	59.35	58.1
EES14264	Sorghum	cytosol, plastid	58.27	58.06
Zm00001d031453_P001	Maize	cytosol	57.91	57.5
TraesCS7D01G245700.1	Wheat	cytosol	58.27	57.24
TraesCS7A01G246900.1	Wheat	plastid	57.91	56.89
TraesCS7A01G427800.1	Wheat	mitochondrion	56.83	56.63
TraesCS7B01G144400.1	Wheat	cytosol	57.19	56.18
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	55.4	55.2
TraesCS2D01G531000.1	Wheat	plastid	55.04	54.84
PGSC0003DMT400062814	Potato	cytosol	19.06	53.0
HORVU7Hr1G050760.2	Barley	vacuole	58.27	51.92
Solyc12g036510.1.1	Tomato	cytosol	40.29	47.46
HORVU2Hr1G116450.1	Barley	plastid	53.96	47.32
Bra007151.1-P	Field mustard	cytosol	75.54	46.88
VIT_08s0040g01210.t01	Wine grape	cytosol	46.04	45.23
KRH76339	Soybean	cytosol	16.91	41.59
Bra030964.1-P	Field mustard	cytosol	26.62	28.14

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EnsemblPlantsGene:Bra040871	EnsemblPlants:Bra040871.1	EnsemblPlants:Bra040871.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M4FIE2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375
PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000253E9D6	SEG:seg

Description

AT3G55290 (E=2e-122) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrScaffold000289:+:27393..28317

Molecular Weight (calculated)

29873.2 Da

IEP (calculated)

8.702

GRAVY (calculated)

0.058

Length

278 amino acids

Sequence
(BLAST)

001: MSNLQTVSKQ QEPWCELKDK VVLVTGASSG IGREICLDLA KAGCKIIAAA RRVDRLKSLC SEINTTGVQA AALELDVSSD AATIQQAVKE AWEAFGKIDA
101: LVNNAGIRGT VKSSLDLSEN EWDKVFKTNL TGAWLVSKYV CILMRDAKDR GGSVINISSI SGLHRGVVPG GIAYATSKGG VDTMTRVMAI ELGVYNIRVN
201: SIAPGLLESE MTQGLMKKKW LKNVTERTIP LKVQQTVDPG ITSLVRYLIH DSSQYVSGNI YILDSGATVP GLPIFSSL

Best Arabidopsis Sequence Match ( AT3G55290.2 )
(BLAST)

001: MSNHQTVLKL LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKSSLDL SEDEWDNVFK TNLKGPWLVS KHVCMLMRDA KRGGSVINIS SIAGIRGMLP GGLAYACSKG GVDTMSRMMA LELGVHKIRV
201: NSIAPGLFKS EITQGLMQKE WLKNVTERTV PLKVQQTVDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.