Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G276800.5 | |
| TraesCS5B01G276400.1 | |
| TraesCS5D01G284200.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | TraesCS5A01G276800.5 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | TraesCS5B01G276400.1 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | TraesCS5D01G284200.4 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G245700.1 | Wheat | cytosol | 97.53 | 97.53 |
| TraesCS7A01G246900.1 | Wheat | plastid | 96.82 | 96.82 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 96.11 | 87.18 |
| Zm00001d031453_P001 | Maize | cytosol | 80.92 | 81.79 |
| EES14264 | Sorghum | cytosol, plastid | 80.57 | 81.72 |
| Os08t0510400-01 | Rice | plastid | 80.57 | 80.28 |
| GSMUA_Achr3P03760_001 | Banana | cytosol | 65.02 | 65.02 |
| GSMUA_Achr3P28470_001 | Banana | cytosol, mitochondrion | 65.02 | 64.79 |
| GSMUA_Achr11P... | Banana | mitochondrion | 62.9 | 63.8 |
| GSMUA_Achr9P12400_001 | Banana | cytosol | 64.31 | 63.41 |
| KRH71588 | Soybean | cytosol | 62.9 | 63.12 |
| PGSC0003DMT400014256 | Potato | cytosol, nucleus, plastid | 24.38 | 62.16 |
| Solyc12g100220.1.1 | Tomato | plastid | 58.66 | 61.25 |
| PGSC0003DMT400088158 | Potato | cytosol | 55.48 | 61.09 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 61.48 | 60.84 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 57.95 | 60.74 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 61.13 | 60.49 |
| PGSC0003DMT400072205 | Potato | cytosol | 61.84 | 60.34 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 57.95 | 60.29 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 28.62 | 60.0 |
| KRH71621 | Soybean | cytosol | 59.72 | 59.93 |
| PGSC0003DMT400018472 | Potato | cytosol | 58.3 | 59.78 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 57.24 | 59.78 |
| GSMUA_Achr3P11750_001 | Banana | cytosol | 56.54 | 59.7 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 56.89 | 59.63 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 48.41 | 59.57 |
| CDY07809 | Canola | plastid | 31.1 | 59.46 |
| Solyc10g080890.1.1 | Tomato | cytosol | 60.78 | 59.31 |
| AT3G55290.1 | Thale cress | cytosol | 58.66 | 59.29 |
| Solyc10g080900.1.1 | Tomato | plastid | 60.07 | 59.23 |
| Solyc10g006860.2.1 | Tomato | plastid | 57.6 | 59.06 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 56.54 | 59.04 |
| Bra024488.1-P | Field mustard | plastid | 30.74 | 58.78 |
| CDY29207 | Canola | plastid | 30.74 | 58.78 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 55.83 | 58.3 |
| AT3G55310.1 | Thale cress | cytosol | 57.24 | 58.06 |
| Solyc12g045030.1.1 | Tomato | nucleus | 55.48 | 57.93 |
| Bra002097.1-P | Field mustard | cytosol | 56.89 | 57.91 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 57.24 | 57.45 |
| Bra040871.1-P | Field mustard | cytosol | 56.18 | 57.19 |
| CDY29203 | Canola | cytosol | 56.18 | 57.19 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 18.37 | 57.14 |
| Solyc10g078360.1.1 | Tomato | cytosol | 58.66 | 57.04 |
| Solyc12g044940.1.1 | Tomato | nucleus | 54.42 | 56.83 |
| CDY07814 | Canola | cytosol | 55.48 | 56.47 |
| AT1G63380.2 | Thale cress | cytosol | 57.24 | 56.45 |
| Bra014762.1-P | Field mustard | cytosol | 55.83 | 56.43 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 55.83 | 56.43 |
| PGSC0003DMT400062814 | Potato | cytosol | 19.79 | 56.0 |
| Bra036706.1-P | Field mustard | cytosol | 56.54 | 55.75 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 55.12 | 55.71 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 54.77 | 55.36 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 56.18 | 55.21 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 55.83 | 55.05 |
| Bra014757.1-P | Field mustard | cytosol | 54.42 | 55.0 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 55.12 | 54.93 |
| PGSC0003DMT400021572 | Potato | cytosol, mitochondrion | 24.03 | 54.84 |
| Solyc12g100280.1.1 | Tomato | cytosol | 24.73 | 54.26 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 54.06 | 54.26 |
| Bra014761.1-P | Field mustard | cytosol | 47.7 | 53.15 |
| Bra014760.1-P | Field mustard | plastid | 43.11 | 53.04 |
| PGSC0003DMT400021571 | Potato | cytosol | 31.8 | 51.72 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 55.83 | 50.64 |
| CDY40209 | Canola | peroxisome | 55.48 | 50.32 |
| CDY02920 | Canola | cytosol | 41.7 | 49.79 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 46.29 | 46.29 |
| Solyc12g036510.1.1 | Tomato | cytosol | 38.16 | 45.76 |
| KRH76339 | Soybean | cytosol | 16.25 | 40.71 |
| Bra007151.1-P | Field mustard | cytosol | 55.12 | 34.82 |
| CDX73391 | Canola | cytosol | 55.83 | 33.69 |
| TraesCS5B01G549100.1 | Wheat | cytosol, peroxisome, plastid | 26.5 | 27.37 |
| CDX91138 | Canola | cytosol, plastid | 15.55 | 27.33 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G144400.1 | EnsemblPlantsGene:TraesCS7B01G144400 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS | PANTHER:PTHR44375 |
| PANTHER:PTHR44375:SF2 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | SEG:seg |
| SMART:SM00822 | SUPFAM:SSF51735 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:186814351..186815567
Molecular Weight (calculated)
29857.1 Da
IEP (calculated)
9.017
GRAVY (calculated)
0.248
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSLPEKAG VPPWSRLEGQ VVLVTGASSG IGRDFCLDLA RAGCRVVAAA RRADRLRSLC DEINASADAA VSHPWAVAVE IDVAAGGSAV EAAVQRAWDA
101: FGRIDVLINN AGLRGGVHSS LDWPEDEWDK LIKTNLTGLW LVAKHVCKHM CDAKIKGSVI NISSVAGLNR GNLPGSIGYA SSKSAVHSVK KIMALELGAY
201: GIRVNAIAPG IFQSEITAPL LQKRWLSTVV SKIVPLKTNG TTDPALTSLV RFLIHEKASY ITGNIFIVDS GVTVPGVPIF SSL
101: FGRIDVLINN AGLRGGVHSS LDWPEDEWDK LIKTNLTGLW LVAKHVCKHM CDAKIKGSVI NISSVAGLNR GNLPGSIGYA SSKSAVHSVK KIMALELGAY
201: GIRVNAIAPG IFQSEITAPL LQKRWLSTVV SKIVPLKTNG TTDPALTSLV RFLIHEKASY ITGNIFIVDS GVTVPGVPIF SSL
001: MSNHQTVLKQ LEPWCELKDK VVLVTGASSG IGREICLDLC KAGCKIVAAA RRVDRLNSLC SEINSFGAIG VQAVALELDV SSEADTIRKA VKEAWETFGK
101: IDVLINNAGI RGNVKSSLDL SEEEWDKVFR TNLTGSWLIS KYVCLLMRDA ERGGSVINVS SISGLHRGLL RGGLAYACSK GGVDTMTRMM AIELAVYKIR
201: VNSIAPGIFR SEITQGLFQK EWLKKVTEKV VPLKMQQTVD PGLTSLVRYL IHDSSQYVTG NTYIVDSGTT LPGVPIFSSL SP
101: IDVLINNAGI RGNVKSSLDL SEEEWDKVFR TNLTGSWLIS KYVCLLMRDA ERGGSVINVS SISGLHRGLL RGGLAYACSK GGVDTMTRMM AIELAVYKIR
201: VNSIAPGIFR SEITQGLFQK EWLKKVTEKV VPLKMQQTVD PGLTSLVRYL IHDSSQYVTG NTYIVDSGTT LPGVPIFSSL SP
Arabidopsis Description
F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.