Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G55310.1 | Thale cress | cytosol | 92.14 | 92.47 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 88.21 | 85.76 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 82.5 | 81.91 |
| AT1G63380.2 | Thale cress | cytosol | 82.14 | 80.14 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 81.07 | 72.76 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 66.79 | 69.0 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 55.36 | 67.39 |
| Solyc12g100220.1.1 | Tomato | plastid | 64.64 | 66.79 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 32.14 | 66.67 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 63.57 | 65.93 |
| PGSC0003DMT400088158 | Potato | cytosol | 59.64 | 64.98 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 62.86 | 64.71 |
| KRH71621 | Soybean | cytosol | 65.0 | 64.54 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 65.71 | 64.34 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 61.07 | 63.33 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 20.36 | 62.64 |
| Solyc10g080900.1.1 | Tomato | plastid | 63.93 | 62.37 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 63.57 | 62.24 |
| Solyc10g080890.1.1 | Tomato | cytosol | 63.93 | 61.72 |
| PGSC0003DMT400072205 | Potato | cytosol | 63.57 | 61.38 |
| KRH71588 | Soybean | cytosol | 61.79 | 61.35 |
| EES14264 | Sorghum | cytosol, plastid | 61.07 | 61.29 |
| Zm00001d031453_P001 | Maize | cytosol | 61.07 | 61.07 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 58.93 | 60.89 |
| Os08t0510400-01 | Rice | plastid | 61.43 | 60.56 |
| Solyc12g045030.1.1 | Tomato | nucleus | 58.57 | 60.52 |
| Solyc10g006860.2.1 | Tomato | plastid | 59.64 | 60.51 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 58.21 | 60.15 |
| Solyc12g044940.1.1 | Tomato | nucleus | 57.86 | 59.78 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 60.0 | 59.36 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 58.93 | 59.14 |
| TraesCS7A01G246900.1 | Wheat | plastid | 59.64 | 59.01 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 59.29 | 58.66 |
| TraesCS2D01G531000.1 | Wheat | plastid | 58.21 | 58.42 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 57.86 | 58.06 |
| PGSC0003DMT400062814 | Potato | cytosol | 20.0 | 56.0 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 60.0 | 53.85 |
| HORVU2Hr1G116450.1 | Barley | plastid | 56.79 | 50.16 |
| Solyc12g036510.1.1 | Tomato | cytosol | 42.14 | 50.0 |
| KRH76339 | Soybean | cytosol | 19.64 | 48.67 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 46.07 | 45.58 |
| AT3G01980.3 | Thale cress | cytosol | 29.64 | 28.04 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:824695 | ProteinID:AEE79365.1 | ArrayExpress:AT3G55290 | EnsemblPlantsGene:AT3G55290 |
| RefSeq:AT3G55290 | TAIR:AT3G55290 | RefSeq:AT3G55290-TAIR-G | EnsemblPlants:AT3G55290.1 | TAIR:AT3G55290.1 | EMBL:AY045955 |
| EMBL:AY079342 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 |
| InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_567019.1 | PFAM:PF00106 | PO:PO:0000293 | PO:PO:0009025 | PRINTS:PR00080 |
| PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF1 | UniProt:Q94AL3 | InterPro:SDR_fam |
| SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI00000A7675 | : | : | : |
Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
Coordinates
chr3:+:20502508..20503868
Molecular Weight (calculated)
30205.7 Da
IEP (calculated)
8.368
GRAVY (calculated)
0.058
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.