Factsheet for TraesCS7A01G427800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G276800.5
TraesCS5B01G276400.1
TraesCS5D01G284200.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	TraesCS5A01G276800.5	AT1G51580.1	21798944
AT3G55290.1	TraesCS5B01G276400.1	AT1G51580.1	21798944
AT3G55290.1	TraesCS5D01G284200.4	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G246900.1	Wheat	plastid	83.15	81.98
EES14264	Sorghum	cytosol, plastid	77.78	77.78
Os08t0510400-01	Rice	plastid	77.78	76.41
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	76.34	76.34
Zm00001d031453_P001	Maize	cytosol	75.99	75.71
GSMUA_Achr3P03760_001	Banana	cytosol	64.87	63.96
GSMUA_Achr3P28470_001	Banana	cytosol, mitochondrion	64.16	63.03
GSMUA_Achr9P12400_001	Banana	cytosol	63.8	62.02
Solyc12g100220.1.1	Tomato	plastid	60.22	61.99
GSMUA_Achr11P...	Banana	mitochondrion	61.65	61.65
Bra024488.1-P	Field mustard	plastid	32.62	61.49
CDY29207	Canola	plastid	32.62	61.49
CDY07809	Canola	plastid	32.26	60.81
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	59.14	60.66
KRH71588	Soybean	cytosol	61.29	60.64
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	58.78	60.52
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	58.42	60.37
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	24.01	60.36
PGSC0003DMT400018472	Potato	cytosol	59.5	60.14
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	29.03	60.0
PGSC0003DMT400088158	Potato	cytosol	55.2	59.92
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	57.71	59.63
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	49.1	59.57
VIT_08s0040g01200.t01	Wine grape	cytosol	60.93	59.44
PGSC0003DMT400072205	Potato	cytosol	61.65	59.31
GSMUA_Achr3P11750_001	Banana	cytosol	56.63	58.96
Solyc10g080900.1.1	Tomato	plastid	60.57	58.88
KRH71621	Soybean	cytosol	59.5	58.87
VIT_08s0040g01190.t01	Wine grape	cytosol	60.22	58.74
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	59.14	58.51
Solyc10g006860.2.1	Tomato	plastid	57.71	58.33
Solyc10g080890.1.1	Tomato	cytosol	60.22	57.93
AT3G55290.1	Thale cress	cytosol	58.06	57.86
Solyc10g078360.1.1	Tomato	cytosol	60.22	57.73
AT1G63380.2	Thale cress	cytosol	59.14	57.49
AT3G55310.1	Thale cress	cytosol	57.35	57.35
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	25.45	57.26
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	18.64	57.14
CDY29203	Canola	cytosol	56.63	56.83
Bra040871.1-P	Field mustard	cytosol	56.63	56.83
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	55.2	56.83
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	55.2	56.83
CDY07814	Canola	cytosol	55.91	56.12
Solyc12g045030.1.1	Tomato	nucleus	54.48	56.09
Solyc12g044940.1.1	Tomato	nucleus	54.48	56.09
PGSC0003DMT400062814	Potato	cytosol	20.07	56.0
Bra002097.1-P	Field mustard	cytosol	55.56	55.76
Bra014762.1-P	Field mustard	cytosol	55.91	55.71
CDY03343	Canola	cytosol, nucleus, peroxisome	55.56	55.36
CDX73333	Canola	cytosol, nucleus, peroxisome	55.56	55.36
Bra014760.1-P	Field mustard	plastid	45.52	55.22
Solyc12g100280.1.1	Tomato	cytosol	25.45	55.04
Bra014757.1-P	Field mustard	cytosol	55.2	55.0
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	56.63	54.86
CDX76107	Canola	cytosol, nucleus, peroxisome	54.84	54.64
CDY44938	Canola	cytosol, peroxisome, plastid	55.56	54.58
CDY48725	Canola	cytosol, peroxisome, plastid	55.91	54.36
Bra036706.1-P	Field mustard	cytosol	55.56	54.01
Bra014761.1-P	Field mustard	cytosol	49.1	53.94
CDY65313	Canola	cytosol, nucleus, peroxisome	54.12	53.55
PGSC0003DMT400021571	Potato	cytosol	33.33	53.45
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	57.35	51.28
CDY40209	Canola	peroxisome	56.63	50.64
CDY02920	Canola	cytosol	41.94	49.37
VIT_08s0040g01210.t01	Wine grape	cytosol	48.03	47.35
Solyc12g036510.1.1	Tomato	cytosol	39.43	46.61
KRH76339	Soybean	cytosol	17.2	42.48
Bra007151.1-P	Field mustard	cytosol	56.27	35.04
CDX73391	Canola	cytosol	56.63	33.69
TraesCS4A01G339500.1	Wheat	cytosol	27.24	27.74
CDX91138	Canola	cytosol, plastid	15.41	26.71

Protein Annotations

EnsemblPlants:TraesCS7A01G427800.1	EnsemblPlantsGene:TraesCS7A01G427800	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS	PANTHER:PTHR44375
PANTHER:PTHR44375:SF2	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	SEG:seg
SMART:SM00822	SUPFAM:SSF51735	TIGR:cd05233	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7A:-:621009313..621011454

Molecular Weight (calculated)

29701.8 Da

IEP (calculated)

9.537

GRAVY (calculated)

0.169

Length

279 amino acids

Sequence
(BLAST)

001: MVSSAGGAPW SRLKGQVVLV TGASSGLGRD FCLDLARAGC RVVAVVRRAD RLRSLCDEIN ASPAADASQP LAVAIELDVA AGGSTVEAAV QRAWDAFGRI
101: DVLINNAGLR GGIHSSLDWP EDDWDKLHKT NLTGSWLVAK HVCRHMRDAK IKGSVINISS VAGLHRGDVH GSTGYASSKA AVHAVTKVMA LELRPYGIRV
201: NSIAPGIFQS EITAALLQKR WWNTVTSKIV PLKTYGTTDP ALTSLVRFLI HETSLYLTGN IFIVDAGLTL PGVPLFSSL

Best Arabidopsis Sequence Match ( AT1G63380.3 )
(BLAST)

001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP

Arabidopsis Description

F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.