CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48725	Canola	cytosol, peroxisome, plastid	93.57	91.29
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	81.43	80.85
CDX76107	Canola	cytosol, nucleus, peroxisome	80.71	80.71
CDY65313	Canola	cytosol, nucleus, peroxisome	80.36	79.79
CDY29203	Canola	cytosol	78.93	79.5
CDX73333	Canola	cytosol, nucleus, peroxisome	79.29	79.29
CDY07814	Canola	cytosol	78.21	78.78
AT1G63380.2	Thale cress	cytosol	80.71	78.75
CDY44938	Canola	cytosol, peroxisome, plastid	79.29	78.17
CDY07809	Canola	plastid	40.71	77.03
CDY29207	Canola	plastid	40.71	77.03
CDY40209	Canola	peroxisome	77.86	69.87
CDY02920	Canola	cytosol	58.57	69.2
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	65.0	67.16
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	54.29	66.09
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	62.5	64.81
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	20.71	63.74
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	61.43	63.7
PGSC0003DMT400088158	Potato	cytosol	57.86	63.03
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	30.36	62.96
Solyc12g100220.1.1	Tomato	plastid	60.71	62.73
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	60.0	61.76
Solyc10g080890.1.1	Tomato	cytosol	63.57	61.38
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	59.29	61.25
Solyc12g044940.1.1	Tomato	nucleus	59.29	61.25
VIT_08s0040g01190.t01	Wine grape	cytosol	62.5	61.19
PGSC0003DMT400072205	Potato	cytosol	63.21	61.03
KRH71621	Soybean	cytosol	61.43	60.99
Solyc12g045030.1.1	Tomato	nucleus	58.93	60.89
VIT_08s0040g01200.t01	Wine grape	cytosol	62.14	60.84
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	58.57	60.52
KRH71588	Soybean	cytosol	60.0	59.57
Solyc10g006860.2.1	Tomato	plastid	58.57	59.42
PGSC0003DMT400062814	Potato	cytosol	21.07	59.0
Solyc10g080900.1.1	Tomato	plastid	60.36	58.88
Os08t0510400-01	Rice	plastid	59.29	58.45
EES14264	Sorghum	cytosol, plastid	57.5	57.71
Zm00001d031453_P001	Maize	cytosol	57.5	57.5
TraesCS7D01G245700.1	Wheat	cytosol	57.5	56.89
TraesCS7A01G246900.1	Wheat	plastid	57.14	56.54
TraesCS2D01G531000.1	Wheat	plastid	55.71	55.91
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	55.71	55.91
TraesCS7B01G144400.1	Wheat	cytosol	56.43	55.83
TraesCS7A01G427800.1	Wheat	mitochondrion	55.36	55.56
HORVU7Hr1G050760.2	Barley	vacuole	57.5	51.6
Solyc12g036510.1.1	Tomato	cytosol	40.0	47.46
HORVU2Hr1G116450.1	Barley	plastid	53.57	47.32
KRH76339	Soybean	cytosol	18.93	46.9
CDX73391	Canola	cytosol	77.5	46.27
VIT_08s0040g01210.t01	Wine grape	cytosol	43.93	43.46
CDX91138	Canola	cytosol, plastid	23.21	40.37
CDY02527	Canola	cytosol	27.14	28.9
CDY65036	Canola	cytosol	26.79	28.52
CDX69242	Canola	cytosol, nucleus, plasma membrane, plastid	12.5	14.34

Protein Annotations

EnsemblPlants:CDY03343	EnsemblPlantsGene:GSBRNA2T00115953001	Gene3D:3.40.50.720	GO:A0A078EUU0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR44375	PANTHER:PTHR44375:SF1	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDY03343
ProteinID:CDY03343.1	ScanProsite:PS00061	SUPFAM:SSF51735	UniParc:UPI0004EE16BA	MapMan:35.1	:

Description

BnaC09g10050D

Coordinates

chrLK031942:+:901897..902843

Molecular Weight (calculated)

30230.1 Da

IEP (calculated)

9.950

GRAVY (calculated)

0.047

Length

280 amino acids

Sequence
(BLAST)

001: MSNPRTMLKK LEPWRDLKDK VVLVTGASSG IGKEICLDLG KAGCKIIAAA RRVDRLNSLC SDINSFCSTG TQAASLKLDV ASDAATIRKA VKGAWGIFGK
101: IDVLINNAGI RGNVKSSLDL SEDEWDKVFR TNLTGPWLVS KYVCILMRDA KQGGSVINIS SMAGVHRGML PGAVAYACSK GGVDIMTRMM AIELGVYKIR
201: VNSIAPGLFK SEITQGLMQK EWLKKVNERT VPLKMQQSVD PGLTSLVRYL IHDSSQYVSG NTYIVDSGAS LPGLPIFSSL

Best Arabidopsis Sequence Match ( AT3G55290.2 )
(BLAST)

001: MSNHQTVLKL LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKSSLDL SEDEWDNVFK TNLKGPWLVS KHVCMLMRDA KRGGSVINIS SIAGIRGMLP GGLAYACSKG GVDTMSRMMA LELGVHKIRV
201: NSIAPGLFKS EITQGLMQKE WLKNVTERTV PLKVQQTVDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.