Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G63380.2 | Thale cress | cytosol | 94.68 | 93.03 |
| AT3G55290.1 | Thale cress | cytosol | 81.91 | 82.5 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 80.85 | 81.43 |
| AT3G55310.1 | Thale cress | cytosol | 79.79 | 80.65 |
| Bra036706.1-P | Field mustard | cytosol | 80.85 | 79.44 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 80.85 | 79.44 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 80.5 | 78.82 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 75.89 | 68.59 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 21.99 | 68.13 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 30.85 | 64.44 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 61.35 | 64.07 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 52.13 | 63.91 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 61.35 | 63.84 |
| PGSC0003DMT400088158 | Potato | cytosol | 57.45 | 63.03 |
| KRH71621 | Soybean | cytosol | 62.41 | 62.41 |
| KRH71588 | Soybean | cytosol | 61.7 | 61.7 |
| Solyc12g100220.1.1 | Tomato | plastid | 59.22 | 61.62 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 62.41 | 61.54 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 62.41 | 61.54 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 58.87 | 61.48 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 59.22 | 61.4 |
| Solyc10g080890.1.1 | Tomato | cytosol | 62.41 | 60.69 |
| Os08t0510400-01 | Rice | plastid | 60.99 | 60.56 |
| PGSC0003DMT400072205 | Potato | cytosol | 62.06 | 60.34 |
| EES14264 | Sorghum | cytosol, plastid | 58.87 | 59.5 |
| Solyc12g045030.1.1 | Tomato | nucleus | 57.09 | 59.41 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 58.51 | 59.14 |
| Solyc10g006860.2.1 | Tomato | plastid | 57.8 | 59.06 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 56.74 | 59.04 |
| Solyc12g044940.1.1 | Tomato | nucleus | 56.74 | 59.04 |
| PGSC0003DMT400062814 | Potato | cytosol | 20.92 | 59.0 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 56.38 | 58.67 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 58.87 | 58.66 |
| Zm00001d031453_P001 | Maize | cytosol | 58.16 | 58.57 |
| TraesCS7A01G246900.1 | Wheat | plastid | 58.51 | 58.3 |
| Solyc10g080900.1.1 | Tomato | plastid | 58.87 | 57.84 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 56.74 | 57.35 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 57.45 | 57.24 |
| TraesCS2D01G531000.1 | Wheat | plastid | 55.32 | 55.91 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 58.87 | 53.21 |
| HORVU2Hr1G116450.1 | Barley | plastid | 54.96 | 48.9 |
| Solyc12g036510.1.1 | Tomato | cytosol | 39.72 | 47.46 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 45.04 | 44.88 |
| KRH76339 | Soybean | cytosol | 17.38 | 43.36 |
| AT3G01980.3 | Thale cress | cytosol | 28.37 | 27.03 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:842558 | ProteinID:AEE33986.1 | ArrayExpress:AT1G62610 | EnsemblPlantsGene:AT1G62610 |
| RefSeq:AT1G62610 | TAIR:AT1G62610 | RefSeq:AT1G62610-TAIR-G | EnsemblPlants:AT1G62610.4 | TAIR:AT1G62610.4 | Unigene:At.48332 |
| UniProt:F4HYU6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_001185294.1 | PFAM:PF00106 | PO:PO:0000005 |
| PO:PO:0000293 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR44375 | PANTHER:PTHR44375:SF1 |
| InterPro:SDR_fam | SMART:SM00822 | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0001E92BA0 | SEG:seg |
Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
Coordinates
chr1:-:23181508..23183183
Molecular Weight (calculated)
30741.5 Da
IEP (calculated)
8.850
GRAVY (calculated)
0.075
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNHQTKQVL KQLEPWCELK DKVVLVTGAS SGIGREICLD LCKAGCKIVA AARRVDRLNS LCSEINSFGA IGVQAAALEL DVSSDADTIR KAVKEAWEIF
101: GTIDVLINNA GIRGNVKSSL DLSKEEWDKV FRTNLTGSWL ISKYVCLLMR DAKRGGSVIN VSSISGLHRG LLRGGLAYAC SKGGVDTMTR MMAIELAVYK
201: IRVNSIAPGI FRSEITQGLF QKEWLEKVTE KIVPLKMQQT VDPGLTSLVR YLIHDSSQYV TGNTYIVDSG ATLPGVPIFS SL
101: GTIDVLINNA GIRGNVKSSL DLSKEEWDKV FRTNLTGSWL ISKYVCLLMR DAKRGGSVIN VSSISGLHRG LLRGGLAYAC SKGGVDTMTR MMAIELAVYK
201: IRVNSIAPGI FRSEITQGLF QKEWLEKVTE KIVPLKMQQT VDPGLTSLVR YLIHDSSQYV TGNTYIVDSG ATLPGVPIFS SL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.