CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44614
KRH47290

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	KRH44614	AT1G51580.1	21798944
AT3G55290.1	KRH47290	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71588	Soybean	cytosol	74.82	74.82
VIT_08s0040g01190.t01	Wine grape	cytosol	70.21	69.23
VIT_08s0040g01200.t01	Wine grape	cytosol	67.73	66.78
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	62.77	65.56
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	31.21	65.19
AT3G55290.1	Thale cress	cytosol	64.54	65.0
CDY07809	Canola	plastid	34.04	64.86
Zm00001d031453_P001	Maize	cytosol	64.18	64.64
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	62.06	64.34
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	61.7	64.21
PGSC0003DMT400072205	Potato	cytosol	65.96	64.14
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	60.99	63.7
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	51.77	63.48
EES14264	Sorghum	cytosol, plastid	62.77	63.44
PGSC0003DMT400088158	Potato	cytosol	57.8	63.42
AT3G55310.1	Thale cress	cytosol	62.41	63.08
Bra024488.1-P	Field mustard	plastid	32.98	62.84
CDY29207	Canola	plastid	32.98	62.84
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	60.28	62.73
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	20.21	62.64
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	62.41	62.41
CDY48725	Canola	cytosol, peroxisome, plastid	63.12	62.02
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	59.57	61.99
CDX76107	Canola	cytosol, nucleus, peroxisome	61.35	61.79
Bra014757.1-P	Field mustard	cytosol	61.35	61.79
CDY03343	Canola	cytosol, nucleus, peroxisome	60.99	61.43
CDX73333	Canola	cytosol, nucleus, peroxisome	60.99	61.43
AT1G63380.2	Thale cress	cytosol	62.41	61.32
Bra036706.1-P	Field mustard	cytosol	62.41	61.32
Os08t0510400-01	Rice	plastid	61.7	61.27
Bra040871.1-P	Field mustard	cytosol	60.28	61.15
CDY29203	Canola	cytosol	60.28	61.15
KRH76339	Soybean	cytosol	24.47	61.06
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	60.28	60.93
TraesCS7D01G245700.1	Wheat	cytosol	60.99	60.78
CDY65313	Canola	cytosol, nucleus, peroxisome	60.64	60.64
Bra014761.1-P	Field mustard	cytosol	54.61	60.63
CDY44938	Canola	cytosol, peroxisome, plastid	60.99	60.56
CDY07814	Canola	cytosol	59.57	60.43
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	61.7	60.42
Bra014762.1-P	Field mustard	cytosol	59.93	60.36
TraesCS2D01G531000.1	Wheat	plastid	59.57	60.22
TraesCS7A01G246900.1	Wheat	plastid	60.28	60.07
TraesCS7B01G144400.1	Wheat	cytosol	59.93	59.72
TraesCS7A01G427800.1	Wheat	mitochondrion	58.87	59.5
Bra002097.1-P	Field mustard	cytosol	58.51	59.35
Bra014760.1-P	Field mustard	plastid	47.52	58.26
Solyc12g100280.1.1	Tomato	cytosol	26.24	57.36
GSMUA_Achr3P03770_001	Banana	cytosol	11.35	56.14
PGSC0003DMT400062814	Potato	cytosol	19.86	56.0
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	61.35	55.45
HORVU7Hr1G050760.2	Barley	vacuole	60.64	54.81
CDY02920	Canola	cytosol	45.39	54.01
HORVU2Hr1G116450.1	Barley	plastid	59.93	53.31
CDY40209	Canola	peroxisome	58.87	53.21
VIT_08s0040g01210.t01	Wine grape	cytosol	48.58	48.41
Bra007151.1-P	Field mustard	cytosol	58.87	37.05
CDX73391	Canola	cytosol	59.22	35.61
KRH03600	Soybean	cytosol	27.66	29.1
CDX91138	Canola	cytosol, plastid	16.31	28.57

Protein Annotations

EntrezGene:100779153	Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A0R0L518	EMBL:ACUP02000918	EnsemblPlantsGene:GLYMA_02G159200
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
EnsemblPlants:KRH71621	ProteinID:KRH71621	ProteinID:KRH71621.1	ProteinID:KRH71622.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375	PANTHER:PTHR44375:SF2	InterPro:SDR_fam
SMART:SM00822	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001AE6181	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:17656862..17660760

Molecular Weight (calculated)

30448.6 Da

IEP (calculated)

9.161

GRAVY (calculated)

-0.105

Length

282 amino acids

Sequence
(BLAST)

001: MATQLSDRLE PWHTLAGKVV MVTGASSGLG RDFCLDLGRA GCRVVVAARR VDRLESLCDE INSMAAGDGG RSRRAVAVEL DVAADDPAVD KYVQKAWEAF
101: GHIDALINNA GVRGNVKSPL ELSEEEWNHA FRTNLTGTWL VSKYVCKRMR DAQRKGSIIN IASIAGLNRG QLPGGAAYSS SKAGVNMLTR VMALELGAHK
201: IRVNSISPGL FKSEITEKLM EKNWLNNVAM KTVPLRKFGT SDPALTSLAR YLIHDSSEYV SGNNFVVDAG ATLPGVPIYS SL

Best Arabidopsis Sequence Match ( AT3G55290.1 )
(BLAST)

001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.