Factsheet for Bra024488.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29207	Canola	plastid	99.32	99.32
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	61.49	67.41
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	41.22	67.03
PGSC0003DMT400062814	Potato	cytosol	39.19	58.0
Bra014760.1-P	Field mustard	plastid	78.38	50.43
KRH76339	Soybean	cytosol	33.78	44.25
Bra014757.1-P	Field mustard	cytosol	77.7	41.07
Bra002097.1-P	Field mustard	cytosol	77.03	41.01
Bra040871.1-P	Field mustard	cytosol	77.03	41.01
PGSC0003DMT400088158	Potato	cytosol	68.24	39.3
Bra036706.1-P	Field mustard	cytosol	75.68	39.02
Bra014762.1-P	Field mustard	cytosol	73.65	38.93
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	70.27	38.38
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	59.46	38.26
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	69.59	38.15
Solyc12g100220.1.1	Tomato	plastid	69.59	38.01
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	68.92	37.5
Solyc10g006860.2.1	Tomato	plastid	69.59	37.32
Bra014761.1-P	Field mustard	cytosol	62.84	36.61
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	75.68	35.9
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	64.86	35.42
Solyc12g045030.1.1	Tomato	nucleus	64.86	35.42
VIT_08s0040g01200.t01	Wine grape	cytosol	68.24	35.31
Solyc12g044940.1.1	Tomato	nucleus	64.19	35.06
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	64.19	35.06
PGSC0003DMT400072205	Potato	cytosol	67.57	34.48
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	62.84	34.44
VIT_08s0040g01190.t01	Wine grape	cytosol	66.22	34.27
Solyc10g080890.1.1	Tomato	cytosol	66.22	33.79
KRH71588	Soybean	cytosol	64.19	33.69
Os08t0510400-01	Rice	plastid	63.51	33.1
KRH71621	Soybean	cytosol	62.84	32.98
Solyc10g080900.1.1	Tomato	plastid	63.51	32.75
TraesCS7A01G427800.1	Wheat	mitochondrion	61.49	32.62
Solyc12g036510.1.1	Tomato	cytosol	50.68	31.78
EES14264	Sorghum	cytosol, plastid	59.46	31.54
TraesCS2D01G531000.1	Wheat	plastid	58.78	31.18
Zm00001d031453_P001	Maize	cytosol	58.78	31.07
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	58.11	30.82
TraesCS7A01G246900.1	Wheat	plastid	58.78	30.74
TraesCS7B01G144400.1	Wheat	cytosol	58.78	30.74
TraesCS7D01G245700.1	Wheat	cytosol	58.78	30.74
HORVU7Hr1G050760.2	Barley	vacuole	58.78	27.88
HORVU2Hr1G116450.1	Barley	plastid	55.41	25.87
Bra007151.1-P	Field mustard	cytosol	70.95	23.44
VIT_08s0040g01210.t01	Wine grape	cytosol	39.86	20.85
Bra030964.1-P	Field mustard	cytosol	26.35	14.83

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.2	EnsemblPlantsGene:Bra024488	EnsemblPlants:Bra024488.1	EnsemblPlants:Bra024488.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M4E6T3
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375
PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000253EF9E	SEG:seg

Description

AT1G62610 (E=2e-051) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA06:+:16165217..16165663

Molecular Weight (calculated)

15850.3 Da

IEP (calculated)

9.086

GRAVY (calculated)

0.383

Length

148 amino acids

Sequence
(BLAST)

001: MGAWLVSKYV CILMCDAKQG GGSVINISSV SGLHRSLSYG AVAYASSKSG VDTMTRAMAI ELGVYNIRVN SIAPGLFKSE ITQALIQKKW FKNVTDRIFP
101: LTAEQTVDPG LTSLVRYLIH DSSIYVSGNV FIVDAGATLP GLPIFSSL

Best Arabidopsis Sequence Match ( AT1G62610.1 )
(BLAST)

001: MQQVLKQLEP WCELKDKVVL VTGASSGIGR EICLDLCKAG CKIVAAARRV DRLNSLCSEI NSFGAIGVQA AALELDVSSD ADTIRKAVKE AWEIFGTIDV
101: LINNAGIRGN VKSSLDLSKE EWDKVFRTNL TGSWLISKYV CLLMRDAKRG GSVINVSSIS GLHRGLLRGG LAYACSKGGV DTMTRMMAIE LAVYKIRVNS
201: IAPGIFRSEI TQGLFQKEWL EKVTEKIVPL KMQQTVDPGL TSLVRYLIHD SSQYVTGNTY IVDSGATLPG VPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.