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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 3
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc12g055780.1.1
Solyc12g055790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G55290.1 Solyc12g055780.1.1 AT1G51580.1 21798944
AT3G55290.1 Solyc12g055790.1.1 AT1G51580.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064364 Potato peroxisome, plastid, vacuole 46.74 95.56
Solyc12g100220.1.1 Tomato plastid 74.28 75.65
Solyc12g100280.1.1 Tomato cytosol 34.06 72.87
Solyc12g044940.1.1 Tomato nucleus 69.2 70.48
Solyc12g045030.1.1 Tomato nucleus 69.2 70.48
CDY29207 Canola plastid 37.32 69.59
Bra024488.1-P Field mustard plastid 37.32 69.59
CDY07809 Canola plastid 36.23 67.57
Solyc10g080900.1.1 Tomato plastid 65.22 62.72
Solyc10g080890.1.1 Tomato cytosol 65.22 62.07
AT3G55290.1 Thale cress cytosol 60.51 59.64
AT3G55310.1 Thale cress cytosol 60.14 59.5
Bra040871.1-P Field mustard cytosol 59.78 59.35
CDY29203 Canola cytosol 59.78 59.35
Os08t0510400-01 Rice plastid 60.87 59.15
CDX76107 Canola cytosol, nucleus, peroxisome 59.78 58.93
Bra014757.1-P Field mustard cytosol 59.78 58.93
Solyc10g078360.1.1 Tomato cytosol 61.96 58.76
TraesCS7D01G245700.1 Wheat cytosol 60.14 58.66
CDY03343 Canola cytosol, nucleus, peroxisome 59.42 58.57
TraesCS2A01G528100.1 Wheat cytosol, peroxisome, plastid 59.06 58.42
TraesCS7A01G246900.1 Wheat plastid 59.78 58.3
CDY07814 Canola cytosol 58.7 58.27
Bra002097.1-P Field mustard cytosol 58.7 58.27
CDX73333 Canola cytosol, nucleus, peroxisome 59.06 58.21
CDY65313 Canola cytosol, nucleus, peroxisome 59.42 58.16
CDY48725 Canola cytosol, peroxisome, plastid 60.14 57.84
AT1G62610.4 Thale cress cytosol, nucleus, peroxisome 59.06 57.8
TraesCS7A01G427800.1 Wheat mitochondrion 58.33 57.71
AT3G46170.1 Thale cress cytosol, extracellular, peroxisome 60.14 57.64
TraesCS7B01G144400.1 Wheat cytosol 59.06 57.6
Bra014762.1-P Field mustard cytosol 58.33 57.5
Zm00001d031453_P001 Maize cytosol 58.33 57.5
Bra036706.1-P Field mustard cytosol 59.78 57.49
CDY44938 Canola cytosol, peroxisome, plastid 59.06 57.39
Bra014760.1-P Field mustard plastid 47.83 57.39
EES14264 Sorghum cytosol, plastid 57.97 57.35
TraesCS2D01G531000.1 Wheat plastid 57.61 56.99
Solyc12g036510.1.1 Tomato cytosol 48.55 56.78
AT1G63380.2 Thale cress cytosol 58.7 56.45
Bra014761.1-P Field mustard cytosol 51.45 55.91
GSMUA_Achr3P03770_001 Banana cytosol 11.23 54.39
AT2G17845.1 Thale cress golgi, peroxisome, plastid 60.51 53.53
HORVU7Hr1G050760.2 Barley vacuole 60.14 53.21
CDY40209 Canola peroxisome 59.78 52.88
CDY02920 Canola cytosol 44.2 51.48
HORVU2Hr1G116450.1 Barley plastid 56.52 49.21
Bra007151.1-P Field mustard cytosol 60.14 37.05
CDX73391 Canola cytosol 60.51 35.61
CDX91138 Canola cytosol, plastid 16.3 27.95
Solyc07g047800.2.1 Tomato cytosol, nucleus, plastid 26.09 27.07
Protein Annotations
EnsemblPlants:Solyc10g006860.2.1EnsemblPlantsGene:Solyc10g006860.2Gene3D:3.40.50.720InterPro:NAD(P)-bd_dom_sfInterPro:SDR_famPANTHER:PTHR44375
PANTHER:PTHR44375:SF1PFAM:PF00106PRINTS:PR00080PRINTS:PR00081SEG:segSUPFAM:SSF51735
UniParc:UPI000276AFB4UniProt:K4CXL7MapMan:35.1:::
Description
No Description!
Coordinates
chr10:+:1293932..1295777
Molecular Weight (calculated)
29396.6 Da
IEP (calculated)
7.180
GRAVY (calculated)
0.226
Length
276 amino acids
Sequence
(BLAST)
001: MALWQDGLSG KVVMVTGASS GIGRELSIDL AKAGCRIIVS ARRVDKLKSL CNHINGRGNS ELDPAPNAIA VELDVTANGG NIEAAVQIAW DAFGHIDVLI
101: NNAGVRGCVS SSLELPEEEW EHTFTTNLRG AWLVSKYVCR HMIDVKQGGG SIINVSSVAG LNRVLVPGGV AYASSKMALD KLTEMMALEL GVHKIRVNSI
201: APGIFKSEMT ESLIQQKWFH GVISRTAPLR TIGTTDPALT SLVRYLIHAS SEYVSGNVFI VDSGATLIGV PIFSSL
Best Arabidopsis Sequence Match ( AT2G17845.1 )
(BLAST)
001: MSFWFRDKSL YVMGISFSTK EHTKRNNMSN HQTVREILLL LYLTCELKDK VVLVTGASSG IGREVCLDLA KAGCKIIAAA RRVDRLKSLC SEINRFEYSA
101: GIQAEALELD VSSDAATVQK AVKKAWEIFG KIDALINNAG FRGNVKSSLD LSEDEWDKVF KTNLTGTWLV SKYVCILMRD AKRGGGSVIN ISSVSWLHRG
201: QVPGGVAYAC SKGGVDTMTR MMALELGVYK IRVNSIAPGL LKSEITQGLM QKEWLKTVIE RTVPLKVQQT VDPGLTSLLR YLVHDSSKYI SGNTYIVDAG
301: ASLVGLPIFS SL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IPI3]
SUBAcon: [peroxisome,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.