Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024488.1-P | Field mustard | plastid | 50.43 | 78.38 |
| Bra014761.1-P | Field mustard | cytosol | 84.35 | 76.38 |
| Bra014757.1-P | Field mustard | cytosol | 92.17 | 75.71 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 91.3 | 74.47 |
| Bra014762.1-P | Field mustard | cytosol | 84.78 | 69.64 |
| Bra040871.1-P | Field mustard | cytosol | 78.26 | 64.75 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 36.09 | 61.48 |
| Bra002097.1-P | Field mustard | cytosol | 73.48 | 60.79 |
| Bra036706.1-P | Field mustard | cytosol | 75.65 | 60.63 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 23.91 | 60.44 |
| PGSC0003DMT400062814 | Potato | cytosol | 25.65 | 59.0 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 75.22 | 55.45 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 52.61 | 52.61 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 62.17 | 52.57 |
| Solyc12g100220.1.1 | Tomato | plastid | 61.74 | 52.4 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 61.74 | 52.4 |
| PGSC0003DMT400088158 | Potato | cytosol | 58.26 | 52.14 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 59.13 | 50.37 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 60.0 | 48.25 |
| Solyc10g006860.2.1 | Tomato | plastid | 57.39 | 47.83 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 56.09 | 47.78 |
| Solyc12g045030.1.1 | Tomato | nucleus | 56.09 | 47.6 |
| KRH71621 | Soybean | cytosol | 58.26 | 47.52 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 55.65 | 47.23 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 58.7 | 47.2 |
| Os08t0510400-01 | Rice | plastid | 57.83 | 46.83 |
| KRH71588 | Soybean | cytosol | 57.39 | 46.81 |
| Solyc12g044940.1.1 | Tomato | nucleus | 54.35 | 46.13 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 54.35 | 46.13 |
| PGSC0003DMT400072205 | Potato | cytosol | 57.83 | 45.86 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 55.22 | 45.52 |
| EES14264 | Sorghum | cytosol, plastid | 55.22 | 45.52 |
| Solyc10g080890.1.1 | Tomato | cytosol | 56.96 | 45.17 |
| Solyc10g080900.1.1 | Tomato | plastid | 56.09 | 44.95 |
| Zm00001d031453_P001 | Maize | cytosol | 53.91 | 44.29 |
| KRH76339 | Soybean | cytosol | 21.74 | 44.25 |
| TraesCS7D01G245700.1 | Wheat | cytosol | 54.35 | 44.17 |
| TraesCS2A01G528100.1 | Wheat | cytosol, peroxisome, plastid | 53.48 | 44.09 |
| TraesCS2D01G531000.1 | Wheat | plastid | 53.48 | 44.09 |
| TraesCS7A01G246900.1 | Wheat | plastid | 53.91 | 43.82 |
| TraesCS7B01G144400.1 | Wheat | cytosol | 53.04 | 43.11 |
| Solyc12g036510.1.1 | Tomato | cytosol | 43.48 | 42.37 |
| HORVU7Hr1G050760.2 | Barley | vacuole | 54.35 | 40.06 |
| Bra007151.1-P | Field mustard | cytosol | 75.22 | 38.62 |
| HORVU2Hr1G116450.1 | Barley | plastid | 51.74 | 37.54 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 43.04 | 34.98 |
| Bra030964.1-P | Field mustard | cytosol | 26.96 | 23.57 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.2 | EnsemblPlantsGene:Bra014760 | EnsemblPlants:Bra014760.1 | EnsemblPlants:Bra014760.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | UniProt:M4DE41 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR44375 |
| PANTHER:PTHR44375:SF1 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0002544B29 | SEG:seg |
Description
AT3G55290 (E=2e-096) | short-chain dehydrogenase/reductase (SDR) family protein
Coordinates
chrA04:-:2857751..2858734
Molecular Weight (calculated)
25043.5 Da
IEP (calculated)
9.120
GRAVY (calculated)
0.126
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKISRTLCS EINSLSSTGI QLAAPIELDV SSDAATIQKA VKQAWDIFGK IDVLINNAGI RGNVKTSLDL TEDEWNTVFR TNLTGPWLVS KYVCSLMRDS
101: KRGGSVINVS SISGLHRGLF FGGVAYACSK GGVDTMTRMM AIELGVYNIR VNSIAPGLLK SEITQGLMQK EWLKNVTDRI IPLKVQQTVD PGITSLVRYL
201: IHDSSRYVSG NIYILDSGTT LPGLPIFSSL
101: KRGGSVINVS SISGLHRGLF FGGVAYACSK GGVDTMTRMM AIELGVYNIR VNSIAPGLLK SEITQGLMQK EWLKNVTDRI IPLKVQQTVD PGITSLVRYL
201: IHDSSRYVSG NIYILDSGTT LPGLPIFSSL
001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AAALELDVSS DADTIRKAVK EAWEIFGTID
101: VLINNAGIRG NVKSSLDLSK EEWDKVFRTN LTGSWLISKY VCLLMRDAKR GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LEKVTEKIVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGATLP GVPIFSSL
101: VLINNAGIRG NVKSSLDLSK EEWDKVFRTN LTGSWLISKY VCLLMRDAKR GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LEKVTEKIVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGATLP GVPIFSSL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.