Factsheet for PGSC0003DMT400036566

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062814	Potato	cytosol	56.04	51.0
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	59.34	48.65
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	68.13	45.93
GSMUA_Achr3P03770_001	Banana	cytosol	28.57	45.61
CDY29207	Canola	plastid	67.03	41.22
Bra024488.1-P	Field mustard	plastid	67.03	41.22
KRH76339	Soybean	cytosol	50.55	40.71
CDY07809	Canola	plastid	65.93	40.54
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	65.93	26.09
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	74.73	25.19
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	71.43	23.99
Bra014760.1-P	Field mustard	plastid	60.44	23.91
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	70.33	23.62
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	69.23	23.25
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	68.13	22.96
PGSC0003DMT400088158	Potato	cytosol	64.84	22.96
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	65.93	22.06
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	68.13	21.99
AT1G63380.2	Thale cress	cytosol	67.03	21.25
KRH71588	Soybean	cytosol	64.84	20.92
CDY03343	Canola	cytosol, nucleus, peroxisome	63.74	20.71
Zm00001d031453_P001	Maize	cytosol	63.74	20.71
PGSC0003DMT400072205	Potato	cytosol	65.93	20.69
AT3G55310.1	Thale cress	cytosol	62.64	20.43
Os08t0510400-01	Rice	plastid	63.74	20.42
AT3G55290.1	Thale cress	cytosol	62.64	20.36
KRH71621	Soybean	cytosol	62.64	20.21
CDY48725	Canola	cytosol, peroxisome, plastid	63.74	20.21
CDX76107	Canola	cytosol, nucleus, peroxisome	61.54	20.0
Bra014757.1-P	Field mustard	cytosol	61.54	20.0
Bra036706.1-P	Field mustard	cytosol	62.64	19.86
CDY65313	Canola	cytosol, nucleus, peroxisome	61.54	19.86
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	62.64	19.79
CDY07814	Canola	cytosol	60.44	19.78
EES14264	Sorghum	cytosol, plastid	60.44	19.71
Bra014762.1-P	Field mustard	cytosol	60.44	19.64
CDX73333	Canola	cytosol, nucleus, peroxisome	60.44	19.64
PGSC0003DMT400018472	Potato	cytosol	59.34	19.57
CDY29203	Canola	cytosol	59.34	19.42
Bra040871.1-P	Field mustard	cytosol	59.34	19.42
CDY44938	Canola	cytosol, peroxisome, plastid	60.44	19.37
Bra002097.1-P	Field mustard	cytosol	58.24	19.06
TraesCS7A01G427800.1	Wheat	mitochondrion	57.14	18.64
CDY40209	Canola	peroxisome	63.74	18.59
TraesCS7B01G144400.1	Wheat	cytosol	57.14	18.37
TraesCS7A01G246900.1	Wheat	plastid	57.14	18.37
TraesCS7D01G245700.1	Wheat	cytosol	57.14	18.37
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	56.04	18.28
TraesCS2D01G531000.1	Wheat	plastid	54.95	17.92
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	60.44	17.63
HORVU7Hr1G050760.2	Barley	vacuole	57.14	16.67
HORVU2Hr1G116450.1	Barley	plastid	53.85	15.46
CDY02920	Canola	cytosol	39.56	15.19
Bra014761.1-P	Field mustard	cytosol	41.76	14.96
Bra007151.1-P	Field mustard	cytosol	62.64	12.72
CDX73391	Canola	cytosol	63.74	12.37
PGSC0003DMT400015737	Potato	cytosol	31.87	10.9
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	0.0	0.0
PGSC0003DMT400021571	Potato	cytosol	0.0	0.0
CDX91138	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400036566	EnsemblPlantsGene:PGSC0003DMG400014094	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR44375	PANTHER:PTHR44375:SF1
PFAM:PF13561	PGSC:PGSC0003DMG400014094	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000294B361	UniProt:M1B3U5
MapMan:35.2	:	:	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400014094]

Coordinates

chr00:-:29401603..29401957

Molecular Weight (calculated)

9935.4 Da

IEP (calculated)

10.057

GRAVY (calculated)

0.559

Length

91 amino acids

Sequence
(BLAST)

1: MAIELGVDKI RVNSITPGFF KSEITEGLFK LKGFPKFLLK IVPLRFIGTT DLGLTSLVRY LIHDSSKYVT GNVFIVDGGS TIVGVPIFSS L

Best Arabidopsis Sequence Match ( AT1G62610.4 )
(BLAST)

001: MSNHQTKQVL KQLEPWCELK DKVVLVTGAS SGIGREICLD LCKAGCKIVA AARRVDRLNS LCSEINSFGA IGVQAAALEL DVSSDADTIR KAVKEAWEIF
101: GTIDVLINNA GIRGNVKSSL DLSKEEWDKV FRTNLTGSWL ISKYVCLLMR DAKRGGSVIN VSSISGLHRG LLRGGLAYAC SKGGVDTMTR MMAIELAVYK
201: IRVNSIAPGI FRSEITQGLF QKEWLEKVTE KIVPLKMQQT VDPGLTSLVR YLIHDSSQYV TGNTYIVDSG ATLPGVPIFS SL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.