Factsheet for PGSC0003DMT400015737

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047800.2.1	Tomato	cytosol, nucleus, plastid	96.24	96.24
VIT_14s0068g01760.t01	Wine grape	cytosol	73.68	73.68
KRH03600	Soybean	cytosol	66.92	66.42
GSMUA_Achr4P16020_001	Banana	cytosol	64.66	64.66
GSMUA_Achr8P17880_001	Banana	cytosol	24.06	60.95
Bra030964.1-P	Field mustard	cytosol	56.39	57.03
CDY65036	Canola	cytosol	56.39	57.03
EER90514	Sorghum	cytosol	57.14	56.93
GSMUA_Achr8P17860_001	Banana	cytosol	37.97	56.74
CDY02527	Canola	cytosol	55.64	56.27
Zm00001d012849_P001	Maize	cytosol	56.39	55.76
Os03t0850000-01	Rice	cytosol	57.89	55.6
TraesCS4A01G339500.1	Wheat	cytosol	53.38	51.82
TraesCS5B01G549100.1	Wheat	cytosol, peroxisome, plastid	52.63	51.09
AT3G01980.3	Thale cress	cytosol	56.77	51.01
TraesCS5D01G536000.3	Wheat	endoplasmic reticulum, peroxisome, plastid	51.88	46.46
HORVU3Hr1G097170.1	Barley	plastid	39.85	39.26
HORVU7Hr1G092130.2	Barley	cytosol, nucleus, plastid	39.1	38.95
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	10.9	31.87
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	12.78	30.63
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	15.41	30.37
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	29.7	29.15
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	29.7	29.04
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	29.32	28.89
PGSC0003DMT400088158	Potato	cytosol	27.82	28.79
PGSC0003DMT400018472	Potato	cytosol	29.7	28.62
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	23.68	27.39
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	27.44	26.94
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	27.44	26.94
PGSC0003DMT400072205	Potato	cytosol	28.95	26.55
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	26.32	25.93
PGSC0003DMT400062814	Potato	cytosol	9.02	24.0
PGSC0003DMT400021571	Potato	cytosol	14.29	21.84
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	10.15	21.77

Protein Annotations

EMBL:JX839748	EnsemblPlants:PGSC0003DMT400015737	EnsemblPlantsGene:PGSC0003DMG402006147	EntrezGene:102592304	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR44375	PFAM:PF13561	PGSC:PGSC0003DMG402006147	PRINTS:PR00081	ProteinID:AFX67031
ProteinID:AFX67031.1	RefSeq:XP_006363009.1	SUPFAM:SSF51735	UniParc:UPI000294F9E0	UniProt:M1A6H0	MapMan:35.2

Description

Short-chain alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG402006147]

Coordinates

chr7:-:44330570..44335718

Molecular Weight (calculated)

29589.9 Da

IEP (calculated)

7.880

GRAVY (calculated)

-0.164

Length

266 amino acids

Sequence
(BLAST)

001: MENHGKKVLL TSNGDDICNN IAYHLAQRGC QLVLMGNELQ LKSVAENIKQ SLKGSVAIEV VGLDMTEDRE TAFDEAVDKA WKIFGKLDSL VHCYAYEGKM
101: QDPLQLIDDE FKKIVKINFM AGWYLLKCIG NRMRDSKSGG SIVFMTSIIG AERGIYQGAA AYGSCAAGIQ QLVRLSAIEL GKHQIRVNGI MRGLHLEDEF
201: PLSVGKERAE KLTKEAAPLN RWLDAKKDLA STVIYLISDD SRYMTGTSIF VDGAQSLVRP RMRSYM

Best Arabidopsis Sequence Match ( AT3G01980.4 )
(BLAST)

001: MENPAKRVLM TSNGDEVSRN IAFHLAKHGC KLVMMGNEGS LRSIVDKIRD SIEGAFPADV IALDMESDSE VAFHAAVQKA WELSGHFDAF LNSYTYQGKV
101: QDILQVSQDE FHRITKINLT APWFLLKAVA TRMKDHGSGG SIVFMATIAS GERALYPGAD AYASTSAAIH QLVRASAMSL GKHKIRVNMI SRGLHLDDEY
201: TASVGRDRAQ KLVKDAAPLG QWLNPDTDLY STVIYLISDG SRFMTGTTVL VDGAQSLTRP RLKSYM

Arabidopsis Description

F28J7.36 protein [Source:UniProtKB/TrEMBL;Acc:Q9SGI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.