Factsheet for PGSC0003DMT400014256

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	48.65	59.34
PGSC0003DMT400062814	Potato	cytosol	52.25	58.0
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	63.96	52.59
PGSC0003DMT400018472	Potato	cytosol	95.5	38.41
Solyc10g078360.1.1	Tomato	cytosol	96.4	36.77
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	65.77	31.74
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	68.47	27.94
VIT_08s0040g01190.t01	Wine grape	cytosol	71.17	27.62
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	65.77	26.94
PGSC0003DMT400088158	Potato	cytosol	62.16	26.85
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	63.96	26.3
PGSC0003DMT400072205	Potato	cytosol	68.47	26.21
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	63.96	26.2
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	63.06	25.93
VIT_08s0040g01200.t01	Wine grape	cytosol	65.77	25.52
Zm00001d031453_P001	Maize	cytosol	63.96	25.36
Os08t0510400-01	Rice	plastid	63.96	25.0
TraesCS7A01G246900.1	Wheat	plastid	63.06	24.73
TraesCS7D01G245700.1	Wheat	cytosol	63.06	24.73
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	62.16	24.73
TraesCS2D01G531000.1	Wheat	plastid	62.16	24.73
EES14264	Sorghum	cytosol, plastid	62.16	24.73
TraesCS7B01G144400.1	Wheat	cytosol	62.16	24.38
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	59.46	24.35
TraesCS7A01G427800.1	Wheat	mitochondrion	60.36	24.01
HORVU7Hr1G050760.2	Barley	vacuole	62.16	22.12
HORVU2Hr1G116450.1	Barley	plastid	61.26	21.45
PGSC0003DMT400015737	Potato	cytosol	30.63	12.78
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	0.0	0.0
PGSC0003DMT400021571	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400014256	EnsemblPlantsGene:PGSC0003DMG400005592	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375
PANTHER:PTHR44375:SF2	PFAM:PF13561	PGSC:PGSC0003DMG400005592	PRINTS:PR00081	SUPFAM:SSF51735	UniParc:UPI000296C112
UniProt:M1A3X5	MapMan:35.2	:	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400005592]

Coordinates

chr10:+:59373815..59374617

Molecular Weight (calculated)

12150.8 Da

IEP (calculated)

9.797

GRAVY (calculated)

0.128

Length

111 amino acids

Sequence
(BLAST)

001: MRGGIAYSSS KAAMDSMTKI MALELGEHNI RVNAIAPGLF KSEITENLVK KEWLKNVAKR SIPLKTFGTT DPALTSLLRY LVHDSSNYVS GNIFIVDAGY
101: TLPGVPIFSF L

Best Arabidopsis Sequence Match ( AT1G63380.3 )
(BLAST)

001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP

Arabidopsis Description

F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.