Factsheet for PGSC0003DMT400062814

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	51.0	56.04
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	58.0	52.25
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	68.0	50.37
GSMUA_Achr3P03770_001	Banana	cytosol	26.0	45.61
KRH76339	Soybean	cytosol	46.0	40.71
CDY07809	Canola	plastid	58.0	39.19
CDY29207	Canola	plastid	58.0	39.19
Bra024488.1-P	Field mustard	plastid	58.0	39.19
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	70.0	30.43
PGSC0003DMT400088158	Potato	cytosol	76.0	29.57
Bra014760.1-P	Field mustard	plastid	59.0	25.65
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	66.0	24.26
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	63.0	23.33
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	62.0	22.96
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	62.0	22.88
Os08t0510400-01	Rice	plastid	62.0	21.83
PGSC0003DMT400072205	Potato	cytosol	63.0	21.72
CDY03343	Canola	cytosol, nucleus, peroxisome	59.0	21.07
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	59.0	20.92
EES14264	Sorghum	cytosol, plastid	58.0	20.79
Zm00001d031453_P001	Maize	cytosol	58.0	20.71
CDX73333	Canola	cytosol, nucleus, peroxisome	58.0	20.71
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	56.0	20.66
PGSC0003DMT400018472	Potato	cytosol	57.0	20.65
AT1G63380.2	Thale cress	cytosol	59.0	20.56
CDY48725	Canola	cytosol, peroxisome, plastid	59.0	20.56
Bra036706.1-P	Field mustard	cytosol	59.0	20.56
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	57.0	20.43
CDY44938	Canola	cytosol, peroxisome, plastid	58.0	20.42
Bra002097.1-P	Field mustard	cytosol	56.0	20.14
TraesCS7D01G245700.1	Wheat	cytosol	57.0	20.14
TraesCS7A01G246900.1	Wheat	plastid	57.0	20.14
TraesCS7A01G427800.1	Wheat	mitochondrion	56.0	20.07
Bra014762.1-P	Field mustard	cytosol	56.0	20.0
AT3G55290.1	Thale cress	cytosol	56.0	20.0
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	54.0	19.93
KRH71621	Soybean	cytosol	56.0	19.86
KRH71588	Soybean	cytosol	56.0	19.86
TraesCS7B01G144400.1	Wheat	cytosol	56.0	19.79
TraesCS2D01G531000.1	Wheat	plastid	55.0	19.71
AT3G55310.1	Thale cress	cytosol	55.0	19.71
CDX76107	Canola	cytosol, nucleus, peroxisome	55.0	19.64
Bra014757.1-P	Field mustard	cytosol	55.0	19.64
CDY65313	Canola	cytosol, nucleus, peroxisome	55.0	19.5
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	56.0	19.44
CDY07814	Canola	cytosol	53.0	19.06
Bra040871.1-P	Field mustard	cytosol	53.0	19.06
CDY29203	Canola	cytosol	53.0	19.06
CDY40209	Canola	peroxisome	58.0	18.59
HORVU7Hr1G050760.2	Barley	vacuole	57.0	18.27
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	56.0	17.95
HORVU2Hr1G116450.1	Barley	plastid	53.0	16.72
Bra014761.1-P	Field mustard	cytosol	39.0	15.35
Bra007151.1-P	Field mustard	cytosol	57.0	12.72
CDX73391	Canola	cytosol	57.0	12.15
CDY02920	Canola	cytosol	28.0	11.81
PGSC0003DMT400015737	Potato	cytosol	24.0	9.02
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	0.0	0.0
PGSC0003DMT400021571	Potato	cytosol	0.0	0.0
CDX91138	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400062814	EnsemblPlantsGene:PGSC0003DMG400024450	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR44375	PFAM:PF13561
PGSC:PGSC0003DMG400024450	SUPFAM:SSF51735	UniParc:UPI0002955939	UniProt:M1C9K4	MapMan:35.2	:

Description

Short-chain type alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024450]

Coordinates

chr1:-:43084648..43085217

Molecular Weight (calculated)

11121.7 Da

IEP (calculated)

9.100

GRAVY (calculated)

0.327

Length

100 amino acids

Sequence
(BLAST)

1: MALDMFTRMM ALEMGVYNIR VNSIAPAIFR SEITESLIQK ESYKRVVSKI VPLRDFGKTN PAITSVVRYL NLHASEYVSG NIFIVDSGCS LTGVPIFSSL

Best Arabidopsis Sequence Match ( AT1G63380.3 )
(BLAST)

001: MQKQVLKQLE PWCELKDKVV LVTGASSGIG REICLDLCKA GCKIVAAARR VDRLNSLCSE INSFGAIGVQ AVALELDVSS EADTIRKAVK EAWETFGKID
101: VLINNAGIRG NVKSSLDLSE EEWDKVFRTN LTGSWLISKY VCLLMRDAER GGSVINVSSI SGLHRGLLRG GLAYACSKGG VDTMTRMMAI ELAVYKIRVN
201: SIAPGIFRSE ITQGLFQKEW LKKVTEKVVP LKMQQTVDPG LTSLVRYLIH DSSQYVTGNT YIVDSGTTLP GVPIFSSLSP

Arabidopsis Description

F2K11.24 [Source:UniProtKB/TrEMBL;Acc:Q9SH24]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.