Factsheet for PGSC0003DMT400021571

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	67.24	94.35
Solyc10g078360.1.1	Tomato	cytosol	92.53	55.33
PGSC0003DMT400018472	Potato	cytosol	87.36	55.07
VIT_08s0040g01190.t01	Wine grape	cytosol	62.07	37.76
VIT_08s0040g01200.t01	Wine grape	cytosol	60.34	36.71
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	54.02	34.81
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	53.45	34.32
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	52.87	33.95
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	52.3	33.7
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	52.3	33.58
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	52.3	33.46
TraesCS7A01G427800.1	Wheat	mitochondrion	53.45	33.33
PGSC0003DMT400088158	Potato	cytosol	48.85	33.07
EES14264	Sorghum	cytosol, plastid	52.87	32.97
TraesCS7D01G245700.1	Wheat	cytosol	53.45	32.86
Zm00001d031453_P001	Maize	cytosol	52.87	32.86
Os08t0510400-01	Rice	plastid	53.45	32.75
TraesCS7A01G246900.1	Wheat	plastid	52.87	32.51
PGSC0003DMT400072205	Potato	cytosol	54.02	32.41
TraesCS7B01G144400.1	Wheat	cytosol	51.72	31.8
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	50.57	31.54
TraesCS2D01G531000.1	Wheat	plastid	50.0	31.18
HORVU7Hr1G050760.2	Barley	vacuole	54.02	30.13
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	37.36	28.26
HORVU2Hr1G116450.1	Barley	plastid	50.0	27.44
PGSC0003DMT400015737	Potato	cytosol	21.84	14.29
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	4.6	5.93
PGSC0003DMT400062814	Potato	cytosol	0.0	0.0
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	0.0	0.0
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400021571	EnsemblPlantsGene:PGSC0003DMG400008363	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR44375
PANTHER:PTHR44375:SF2	PFAM:PF00106	PGSC:PGSC0003DMG400008363	PRINTS:PR00081	SUPFAM:SSF51735	UniParc:UPI000294F311
UniProt:M1AFC5	MapMan:35.2	:	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400008363]

Coordinates

chr10:+:59293135..59294880

Molecular Weight (calculated)

18907.5 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.212

Length

174 amino acids

Sequence
(BLAST)

001: MTTQVPKYVE PRTQEMNNVA NHLEPWLQLE GKVVFVTGAS AGLGREFCLD LARSGCRVVA GARRGDRLKS LCDEINTMAS SNSHLVRAMA IELDVTADGT
101: TIEASIKKAW DAFGHIDALI NNAGVRGGIK SSVDISEEEW ENTLRTNLTG SWLVSNYVGR QMQASKKGGS IINI

Best Arabidopsis Sequence Match ( AT1G62610.1 )
(BLAST)

001: MQQVLKQLEP WCELKDKVVL VTGASSGIGR EICLDLCKAG CKIVAAARRV DRLNSLCSEI NSFGAIGVQA AALELDVSSD ADTIRKAVKE AWEIFGTIDV
101: LINNAGIRGN VKSSLDLSKE EWDKVFRTNL TGSWLISKYV CLLMRDAKRG GSVINVSSIS GLHRGLLRGG LAYACSKGGV DTMTRMMAIE LAVYKIRVNS
201: IAPGIFRSEI TQGLFQKEWL EKVTEKIVPL KMQQTVDPGL TSLVRYLIHD SSQYVTGNTY IVDSGATLPG VPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HYU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.