Factsheet for VIT_08s0040g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0054g00450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	VIT_09s0054g00450.t01	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01190.t01	Wine grape	cytosol	92.66	92.66
CDY07809	Canola	plastid	36.36	70.27
CDY29207	Canola	plastid	35.31	68.24
Bra024488.1-P	Field mustard	plastid	35.31	68.24
KRH71621	Soybean	cytosol	66.78	67.73
PGSC0003DMT400018472	Potato	cytosol	64.69	67.03
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	25.52	65.77
KRH71588	Soybean	cytosol	64.69	65.6
Os08t0510400-01	Rice	plastid	63.99	64.44
Solyc10g078360.1.1	Tomato	cytosol	65.03	63.92
Zm00001d031453_P001	Maize	cytosol	62.24	63.57
AT3G55290.1	Thale cress	cytosol	62.24	63.57
CDY29203	Canola	cytosol	61.54	63.31
Bra040871.1-P	Field mustard	cytosol	61.54	63.31
EES14264	Sorghum	cytosol, plastid	61.54	63.08
TraesCS7D01G245700.1	Wheat	cytosol	62.24	62.9
Bra014762.1-P	Field mustard	cytosol	61.54	62.86
CDY48725	Canola	cytosol, peroxisome, plastid	62.94	62.72
Bra002097.1-P	Field mustard	cytosol	60.84	62.59
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	61.54	62.41
CDY07814	Canola	cytosol	60.49	62.23
TraesCS7A01G246900.1	Wheat	plastid	61.54	62.19
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	62.59	62.15
CDX73333	Canola	cytosol, nucleus, peroxisome	60.84	62.14
CDY03343	Canola	cytosol, nucleus, peroxisome	60.84	62.14
CDX76107	Canola	cytosol, nucleus, peroxisome	60.84	62.14
Bra014757.1-P	Field mustard	cytosol	60.84	62.14
CDY65313	Canola	cytosol, nucleus, peroxisome	61.19	62.06
TraesCS7B01G144400.1	Wheat	cytosol	60.84	61.48
GSMUA_Achr3P03770_001	Banana	cytosol	12.24	61.4
AT1G63380.2	Thale cress	cytosol	61.54	61.32
TraesCS2D01G531000.1	Wheat	plastid	59.79	61.29
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	59.79	61.29
CDY44938	Canola	cytosol, peroxisome, plastid	60.84	61.27
Bra036706.1-P	Field mustard	cytosol	61.19	60.98
AT3G55310.1	Thale cress	cytosol	59.44	60.93
TraesCS7A01G427800.1	Wheat	mitochondrion	59.44	60.93
PGSC0003DMT400021571	Potato	cytosol	36.71	60.34
Bra014761.1-P	Field mustard	cytosol	53.5	60.24
Bra014760.1-P	Field mustard	plastid	47.2	58.7
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	25.17	58.06
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	61.54	56.41
HORVU7Hr1G050760.2	Barley	vacuole	61.54	56.41
CDY40209	Canola	peroxisome	61.19	56.09
CDY02920	Canola	cytosol	46.15	55.7
HORVU2Hr1G116450.1	Barley	plastid	57.69	52.05
VIT_08s0040g01210.t01	Wine grape	cytosol	50.35	50.88
KRH76339	Soybean	cytosol	19.58	49.56
Bra007151.1-P	Field mustard	cytosol	61.54	39.29
CDX73391	Canola	cytosol	61.54	37.53
VIT_14s0068g01760.t01	Wine grape	cytosol	28.67	30.83
CDX91138	Canola	cytosol, plastid	17.13	30.43

Protein Annotations

EntrezGene:100253435	wikigene:100253435	Gene3D:3.40.50.720	MapMan:35.1	EMBL:AM476700	ProteinID:CAN59905
ProteinID:CAN59905.1	ProteinID:CCB57112	ProteinID:CCB57112.1	UniProt:F6HR63	EMBL:FN596008	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100253435
wikigene:LOC100253435	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR44375	PANTHER:PTHR44375:SF2	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00015CAF8B
ArrayExpress:VIT_08s0040g01200	EnsemblPlantsGene:VIT_08s0040g01200	EnsemblPlants:VIT_08s0040g01200.t01	unigene:Vvi.24522	RefSeq:XP_002282735	RefSeq:XP_002282735.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:12215952..12218118

Molecular Weight (calculated)

30452.5 Da

IEP (calculated)

8.470

GRAVY (calculated)

0.042

Length

286 amino acids

Sequence
(BLAST)

001: MACQVADHLE PWQDLEGKVV LVTGASSGLG SEFCLNLAKA GCKIVAAARR VDRLKSLCDE INNLTHSNLP PNADRPVRAV VVELDVTSGG SSISASVQKA
101: WEAFGRIDVL LNNAGIRGNV NSPLDISEEE WNNTLKTNLT GSWLVSKYVG MRMRDAKNGG SIINISSIVS LNRGQSPGAV AYVSSKSGLS AMTKVMALEL
201: GAYNIRANAI APGIFKSEIT AGLMQKDWLN TVVQRTCPLR AYGTSDPALT SLVRYLIHDS SRYISGNVFN VDAGATLPGV PIFSSL

Best Arabidopsis Sequence Match ( AT3G55290.1 )
(BLAST)

001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.