Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G276800.5 | |
| TraesCS5B01G276400.1 | |
| TraesCS5D01G284200.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55290.1 | TraesCS5A01G276800.5 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | TraesCS5B01G276400.1 | AT1G51580.1 | 21798944 |
| AT3G55290.1 | TraesCS5D01G284200.4 | AT1G51580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G531000.1 | Wheat | plastid | 92.11 | 92.11 |
| HORVU2Hr1G116450.1 | Barley | plastid | 93.19 | 82.02 |
| TraesCS7A01G246900.1 | Wheat | plastid | 80.29 | 79.15 |
| TraesCS7A01G427800.1 | Wheat | mitochondrion | 76.34 | 76.34 |
| EES14264 | Sorghum | cytosol, plastid | 75.27 | 75.27 |
| Os08t0510400-01 | Rice | plastid | 76.34 | 75.0 |
| Zm00001d031453_P001 | Maize | cytosol | 74.55 | 74.29 |
| GSMUA_Achr3P03760_001 | Banana | cytosol | 63.08 | 62.19 |
| PGSC0003DMT400014256 | Potato | cytosol, nucleus, plastid | 24.73 | 62.16 |
| KRH71588 | Soybean | cytosol | 62.37 | 61.7 |
| GSMUA_Achr9P12400_001 | Banana | cytosol | 63.44 | 61.67 |
| GSMUA_Achr11P... | Banana | mitochondrion | 60.93 | 60.93 |
| PGSC0003DMT400088158 | Potato | cytosol | 55.91 | 60.7 |
| PGSC0003DMT400061270 | Potato | cytosol, nucleus, peroxisome | 59.14 | 60.66 |
| GSMUA_Achr3P28470_001 | Banana | cytosol, mitochondrion | 61.65 | 60.56 |
| PGSC0003DMT400092434 | Potato | cytosol, nucleus, peroxisome | 58.42 | 60.37 |
| KRH71621 | Soybean | cytosol | 60.93 | 60.28 |
| Solyc12g100220.1.1 | Tomato | plastid | 58.42 | 60.15 |
| VIT_08s0040g01200.t01 | Wine grape | cytosol | 61.29 | 59.79 |
| PGSC0003DMT400030315 | Potato | nucleus, peroxisome, plastid | 58.06 | 59.78 |
| GSMUA_Achr3P11750_001 | Banana | cytosol | 57.35 | 59.7 |
| PGSC0003DMT400064364 | Potato | peroxisome, plastid, vacuole | 28.67 | 59.26 |
| Solyc10g006860.2.1 | Tomato | plastid | 58.42 | 59.06 |
| PGSC0003DMT400072205 | Potato | cytosol | 61.29 | 58.97 |
| AT3G55290.1 | Thale cress | cytosol | 59.14 | 58.93 |
| PGSC0003DMT400030316 | Potato | nucleus, peroxisome, plastid | 56.99 | 58.89 |
| CDY07809 | Canola | plastid | 31.18 | 58.78 |
| AT3G55310.1 | Thale cress | cytosol | 58.78 | 58.78 |
| PGSC0003DMT400096536 | Potato | cytosol, nucleus, peroxisome | 48.39 | 58.7 |
| PGSC0003DMT400018472 | Potato | cytosol | 58.06 | 58.7 |
| Solyc10g080890.1.1 | Tomato | cytosol | 60.57 | 58.28 |
| Bra024488.1-P | Field mustard | plastid | 30.82 | 58.11 |
| CDY29207 | Canola | plastid | 30.82 | 58.11 |
| VIT_08s0040g01190.t01 | Wine grape | cytosol | 59.5 | 58.04 |
| Solyc10g080900.1.1 | Tomato | plastid | 58.78 | 57.14 |
| PGSC0003DMT400062814 | Potato | cytosol | 20.43 | 57.0 |
| Bra002097.1-P | Field mustard | cytosol | 56.63 | 56.83 |
| AT1G62610.4 | Thale cress | cytosol, nucleus, peroxisome | 57.35 | 56.74 |
| PGSC0003DMT400036569 | Potato | nucleus, peroxisome, plastid | 54.84 | 56.46 |
| Solyc10g078360.1.1 | Tomato | cytosol | 58.78 | 56.36 |
| Solyc12g045030.1.1 | Tomato | nucleus | 54.48 | 56.09 |
| Bra014762.1-P | Field mustard | cytosol | 56.27 | 56.07 |
| PGSC0003DMT400036566 | Potato | cytosol, extracellular, nucleus | 18.28 | 56.04 |
| AT1G63380.2 | Thale cress | cytosol | 57.35 | 55.75 |
| Solyc12g044940.1.1 | Tomato | nucleus | 54.12 | 55.72 |
| CDY03343 | Canola | cytosol, nucleus, peroxisome | 55.91 | 55.71 |
| Bra040871.1-P | Field mustard | cytosol | 55.2 | 55.4 |
| CDY29203 | Canola | cytosol | 55.2 | 55.4 |
| PGSC0003DMT400083885 | Potato | nucleus, peroxisome, plastid | 53.76 | 55.35 |
| CDX73333 | Canola | cytosol, nucleus, peroxisome | 55.2 | 55.0 |
| CDY07814 | Canola | cytosol | 54.48 | 54.68 |
| CDX76107 | Canola | cytosol, nucleus, peroxisome | 54.84 | 54.64 |
| AT3G46170.1 | Thale cress | cytosol, extracellular, peroxisome | 56.27 | 54.51 |
| CDY48725 | Canola | cytosol, peroxisome, plastid | 55.91 | 54.36 |
| Solyc12g100280.1.1 | Tomato | cytosol | 25.09 | 54.26 |
| CDY44938 | Canola | cytosol, peroxisome, plastid | 55.2 | 54.23 |
| PGSC0003DMT400021572 | Potato | cytosol, mitochondrion | 24.01 | 54.03 |
| Bra014757.1-P | Field mustard | cytosol | 54.12 | 53.93 |
| Bra036706.1-P | Field mustard | cytosol | 55.2 | 53.66 |
| Bra014760.1-P | Field mustard | plastid | 44.09 | 53.48 |
| Bra014761.1-P | Field mustard | cytosol | 48.39 | 53.15 |
| CDY65313 | Canola | cytosol, nucleus, peroxisome | 53.41 | 52.84 |
| AT2G17845.1 | Thale cress | golgi, peroxisome, plastid | 56.63 | 50.64 |
| PGSC0003DMT400021571 | Potato | cytosol | 31.54 | 50.57 |
| CDY02920 | Canola | cytosol | 42.65 | 50.21 |
| CDY40209 | Canola | peroxisome | 55.91 | 50.0 |
| KRH76339 | Soybean | cytosol | 19.35 | 47.79 |
| Solyc12g036510.1.1 | Tomato | cytosol | 39.07 | 46.19 |
| VIT_08s0040g01210.t01 | Wine grape | cytosol | 46.24 | 45.58 |
| Bra007151.1-P | Field mustard | cytosol | 55.56 | 34.6 |
| CDX73391 | Canola | cytosol | 55.91 | 33.26 |
| TraesCS4A01G339500.1 | Wheat | cytosol | 29.39 | 29.93 |
| CDX91138 | Canola | cytosol, plastid | 16.49 | 28.57 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 |
| PANTHER:PTHR44375 | PANTHER:PTHR44375:SF2 | InterPro:SDR_fam | SMART:SM00822 | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS |
| EnsemblPlantsGene:TraesCS2A01G528100 | EnsemblPlants:TraesCS2A01G528100.1 | TIGR:cd05233 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:747160085..747161559
Molecular Weight (calculated)
29492.8 Da
IEP (calculated)
8.760
GRAVY (calculated)
0.234
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSRPETAG GALWSKLQGQ VVLVTGASSG IGREFCLDLA RGGCRVVAAA RRADRLCSLC DEINAAAEAP LAVAVELDVA AGESFVEAAV QKAWDAFGRV
101: DVLINNAGVR GGVHSALDWP EDEWDKLMKT NLRGVWLVAK HVCRRMRDAK LKGSVINISS TSGLDGGITH GSLAYSASKS AVHSVTKLMA LELGAHGIRV
201: NTIAPGIFKS EITAPLLQKR WLNDVVSKIV PLKKIGTPDP ALTSLVRFLI HETSSYISGN IFVVDSGLVL PGVPIFSSL
101: DVLINNAGVR GGVHSALDWP EDEWDKLMKT NLRGVWLVAK HVCRRMRDAK LKGSVINISS TSGLDGGITH GSLAYSASKS AVHSVTKLMA LELGAHGIRV
201: NTIAPGIFKS EITAPLLQKR WLNDVVSKIV PLKKIGTPDP ALTSLVRFLI HETSSYISGN IFVVDSGLVL PGVPIFSSL
001: MSNHQTVLKL LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKSSLDL SEDEWDNVFK TNLKGPWLVS KHVCMLMRDA KRGGSVINIS SIAGIRGMLP GGLAYACSKG GVDTMSRMMA LELGVHKIRV
201: NSIAPGLFKS EITQGLMQKE WLKNVTERTV PLKVQQTVDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL
101: IDALINNAGI RGNVKSSLDL SEDEWDNVFK TNLKGPWLVS KHVCMLMRDA KRGGSVINIS SIAGIRGMLP GGLAYACSKG GVDTMSRMMA LELGVHKIRV
201: NSIAPGLFKS EITQGLMQKE WLKNVTERTV PLKVQQTVDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.