Factsheet for PGSC0003DMT400061270

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100220.1.1	Tomato	plastid	94.85	95.2
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	76.84	77.41
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	65.07	76.96
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	76.47	76.75
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	76.1	76.67
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	37.87	76.3
PGSC0003DMT400088158	Potato	cytosol	70.59	74.71
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	72.06	72.32
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	71.32	71.59
Solyc12g036510.1.1	Tomato	cytosol	61.76	71.19
CDY29207	Canola	plastid	37.5	68.92
CDY07809	Canola	plastid	37.5	68.92
Bra024488.1-P	Field mustard	plastid	37.5	68.92
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	27.94	68.47
PGSC0003DMT400062814	Potato	cytosol	24.26	66.0
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	22.06	65.93
PGSC0003DMT400072205	Potato	cytosol	68.75	64.48
PGSC0003DMT400018472	Potato	cytosol	64.34	63.41
AT3G55290.1	Thale cress	cytosol	64.71	62.86
Bra014760.1-P	Field mustard	plastid	52.57	62.17
KRH71621	Soybean	cytosol	64.34	62.06
CDX76107	Canola	cytosol, nucleus, peroxisome	63.6	61.79
Bra014757.1-P	Field mustard	cytosol	63.6	61.79
AT3G55310.1	Thale cress	cytosol	63.24	61.65
CDY29203	Canola	cytosol	62.87	61.51
Bra040871.1-P	Field mustard	cytosol	62.87	61.51
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	65.07	61.46
CDX73333	Canola	cytosol, nucleus, peroxisome	63.24	61.43
CDY07814	Canola	cytosol	62.5	61.15
Bra014761.1-P	Field mustard	cytosol	56.99	61.02
CDY65313	Canola	cytosol, nucleus, peroxisome	63.24	60.99
KRH71588	Soybean	cytosol	62.87	60.64
CDY44938	Canola	cytosol, peroxisome, plastid	63.24	60.56
CDY03343	Canola	cytosol, nucleus, peroxisome	61.76	60.0
Bra014762.1-P	Field mustard	cytosol	61.76	60.0
TraesCS7D01G245700.1	Wheat	cytosol	62.13	59.72
Bra002097.1-P	Field mustard	cytosol	61.03	59.71
TraesCS7A01G246900.1	Wheat	plastid	61.76	59.36
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	61.4	59.22
Os08t0510400-01	Rice	plastid	61.76	59.15
TraesCS7A01G427800.1	Wheat	mitochondrion	60.66	59.14
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	60.66	59.14
CDY48725	Canola	cytosol, peroxisome, plastid	62.13	58.88
Bra036706.1-P	Field mustard	cytosol	61.76	58.54
Zm00001d031453_P001	Maize	cytosol	59.93	58.21
AT1G63380.2	Thale cress	cytosol	61.4	58.19
EES14264	Sorghum	cytosol, plastid	59.56	58.06
TraesCS7B01G144400.1	Wheat	cytosol	60.29	57.95
GSMUA_Achr3P03770_001	Banana	cytosol	12.13	57.89
TraesCS2D01G531000.1	Wheat	plastid	59.19	57.71
CDY40209	Canola	peroxisome	62.87	54.81
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	62.87	54.81
HORVU7Hr1G050760.2	Barley	vacuole	61.76	53.85
CDY02920	Canola	cytosol	46.32	53.16
PGSC0003DMT400021571	Potato	cytosol	33.46	52.3
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	23.53	51.61
HORVU2Hr1G116450.1	Barley	plastid	59.19	50.79
KRH76339	Soybean	cytosol	19.85	47.79
Bra007151.1-P	Field mustard	cytosol	63.6	38.62
CDX73391	Canola	cytosol	63.97	37.1
PGSC0003DMT400015737	Potato	cytosol	29.04	29.7
CDX91138	Canola	cytosol, plastid	16.18	27.33

Protein Annotations

EntrezGene:102598937	Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1C7A8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
EnsemblPlantsGene:PGSC0003DMG400023847	PGSC:PGSC0003DMG400023847	EnsemblPlants:PGSC0003DMT400061270	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR44375	PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SMART:SM00822	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0002957D05	RefSeq:XP_006365803.1	SEG:seg	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400023847]

Coordinates

chr12:+:60838845..60839921

Molecular Weight (calculated)

29747.0 Da

IEP (calculated)

7.384

GRAVY (calculated)

0.078

Length

272 amino acids

Sequence
(BLAST)

001: MEQWKDLTGK VVMVTGASSG IGLEFCLDLA KAGCRIIASA RRVDRLKTLC NQININSEGL ARRSIAVQLD ITADSATIEA AVQIAWDAFG RIDVLINNAG
101: LRGNVYNSLD LPEEEWEHIY KTNLRGTWLV SKYVCRHMRD SKQDGGSVIN ISSISGLNRV LIPGGLAYAS SKMALDMVTK MMALELGVDN IRVNSISPGI
201: FKSEITKSLM EKEWFNNVTV RTIPLRTLGT TDPALTSTVR YLIHDSSEYI SGNVFIVDAG TTLTGVPIFS SL

Best Arabidopsis Sequence Match ( AT3G55290.1 )
(BLAST)

001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG
101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR
201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.